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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGCATTTGGGGCGAAAAGATGGGTCGCTACTTTAGACCGCCAATGCGAGCGTCTTGCAAGTGCCATGGCAACAAACATTCCTACGGGTGAAGTTGGTGgtagtaattttattttgttgtatttttcccacattaaatttatatcataaagaccaataccaatgaatttcaattgaattctaaggatttaggcaacaacatatgtagaacgattattactaaacctatataattgtcactgcacag

Basic information

species Vitis vinifera
transcript Vv12s0059g02310.t01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351024273|gb|FQ423696.1|FQ423696
EST:     GCGTCTTGCAAGTGCCATGGCAACAAACATTCCTACGGGTGAAGTTGGTG                         TGATAACAAGTCAAGAAGGGAGAAAAAGTATGTTGAAGCTGGCTGAAAGAA
genomic: GCGTCTTGCAAGTGCCATGGCAACAAACATTCCTACGGGTGAAGTTGGTGgtagtaattt ... cactgcacagTGATAACAAGTCAAGAAGGGAGAAAAAGTATGTTGAAGCTGGCTGAAAGAA
EST: gi|110418253|gb|EC984389.1|EC984389
EST:     GCGTCTTGCAAGTGCCATGGCAACAAACATTCCTACGGGTGAAGTTGGTG                         TGATAACAAGTCAAGAAGGGAGAAAAAGTATGTTGAAGCTGGCTGAAAGAA
genomic: GCGTCTTGCAAGTGCCATGGCAACAAACATTCCTACGGGTGAAGTTGGTGgtagtaattt ... cactgcacagTGATAACAAGTCAAGAAGGGAGAAAAAGTATGTTGAAGCTGGCTGAAAGAA