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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTGgtaagctgttttatgttctttttgtggatctggctttcacttgcaatgtagatgttctgcaaattgtggtcacctcattttttttgccttgttttctccatgcag

Basic information

species Vitis vinifera
transcript Vv12s0059g01930.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0059g01930.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os05g42330.1 (Oryza sativa), 5'ss of exon 8
GACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTGgtaagctgttttatgttctt--tttgtggatctggctttcacttgcaatgtagatgttctgcaaat---tgtggtcacctcattttttttgc---cttgttttctccatgcag------
 ||||| |||||| | ||||| |||||||||||  |||||||||||||||  |  | ||   |     ||| |   ||     ||  | |  ||| ||||||  |     ||        ||| ||    ||  | ||   ||     |||   | ||       
AACTGAGAGTGCTTTGAAGTTTGGGTGGTTTTTTCTGTTTTACCTGgtaaaataatctaaactaaaggtttttcagtcatatcttagcattaaat-tagatgagccaagcatgaacaaattcatctgtacttcatagctaactaacaatctttgtccatttccag

upper sequence: Vv12s0059g01930.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G169773_T02 (Zea mays), 5'ss of exon 8
GACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTGgtaagctgttttatgttctttttgtggatctggctttcacttgcaatgtagatgttctgcaaattgtggtcacctcattttttttgccttgttttctccatgcag
|||||| |||||| | ||||| ||||||||||||||||||||||| ||||| |    |||  ||  ||  |  ||  |      |     |   |  |    |||| |||  |  | ||| | |                           
GACTGAAAGTGCTTTGAAGTTTGGGTGGTTTTTCTTGTTTTACCTTgtaagat----tatcatcacttcatatattaga-----aaaaatatatttcactccctgctaatgatctttaccccttccag-----------------------

upper sequence: Vv12s0059g01930.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT2G20840.1 (Arabidopsis thaliana), 5'ss of exon 8
GACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTGgtaagctgttttatgttctttttgtggatctggctttcacttgcaatgtagatgttctgcaaattgtggtcacctcattttttttgccttgttttctccatgcag
||||||||||||||| ||||| ||||||||||||||    || ||||| || | ||  || |  |||  ||| |     ||||   |       | ||        ||  ||        | |    ||      || || |         
GACTGATAGTGCTCTGAAGTTTGGGTGGTTTTTCTTCACGTATCTGgtgagtt-ttccatttggtttcagtgaa-----ctttttttaatggctttgacacatcaaaaggtggaagtgagtaaaagcttaaaatatgattgcag-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110418607|gb|EC984768.1|EC984768
EST:     GACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTG                         CTTCATATTGCCTTCTGCATCTTTGCTTCAGTTGCTCCTCCAATTGTATTC
genomic: GACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTGgtaagctgtt ... ctccatgcagCTTCATATTGCCTTCTGCATCTTTGCTTCAGTTGCTCCTCCAATTGTATTC
EST: gi|77584192|gb|DV221151.1|DV221151
EST:     GACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTG                         CTTCATATTGCCTTCTGCATCTTTGCTTCAGTTGCTCCTCCAATTGTATTC
genomic: GACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTGgtaagctgtt ... ctccatgcagCTTCATATTGCCTTCTGCATCTTTGCTTCAGTTGCTCCTCCAATTGTATTC
EST: gi|27586086|gb|CB008781.1|CB008781
EST:     GACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTG                         CTTCATATTGCCTTCTGCATCTTTGCTTCAG
genomic: GACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTGgtaagctgtt ... ctccatgcagCTTCATATTGCCTTCTGCATCTTTGCTTCAG
EST: gi|110385536|gb|EC950069.1|EC950069
EST:     GACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTG                         CTTCATATTGCCTTCTGCATCTTTGCTTCAGTTGCTCCTCCAATTGTATTC
genomic: GACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTGgtaagctgtt ... ctccatgcagCTTCATATTGCCTTCTGCATCTTTGCTTCAGTTGCTCCTCCAATTGTATTC
EST: gi|110388736|gb|EC953515.1|EC953515
EST:     GACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTG                         CTTCATATTGCCTTCTGCATCTTTGCTTCAGTTGCTCCTCCAATTGTATTC
genomic: GACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTGgtaagctgtt ... ctccatgcagCTTCATATTGCCTTCTGCATCTTTGCTTCAGTTGCTCCTCCAATTGTATTC
EST: gi|110376126|gb|EC941168.1|EC941168
EST:     GACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTG                         CTTCATATTGCCTTCTGCATCTTTGCTTCAGTTGCTCCTCCAATTGTATTC
genomic: GACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTGgtaagctgtt ... ctccatgcagCTTCATATTGCCTTCTGCATCTTTGCTTCAGTTGCTCCTCCAATTGTATTC
EST: gi|110357026|gb|EC920280.1|EC920280
EST:     GACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTG                         CTTCATATTGCCTTCTGCATCTTTGCTTCAGTTGCTCCTCCAATTGTATTC
genomic: GACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTGgtaagctgtt ... ctccatgcagCTTCATATTGCCTTCTGCATCTTTGCTTCAGTTGCTCCTCCAATTGTATTC
EST: gi|32245954|gb|CD711773.1|CD711773
EST:     GACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTG                         CTTCATATTGCCTTCTGCATCTTTGCTTCAGTTGCTCCTCCAATTGTATTC
genomic: GACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTGgtaagctgtt ... ctccatgcagCTTCATATTGCCTTCTGCATCTTTGCTTCAGTTGCTCCTCCAATTGTATTC
EST: gi|71870414|gb|DT019469.1|DT019469
EST:     GACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTG                         CTTCATATTGCCTTCTGCATCTTTGCTTCAGTTGCTCCTCCAATTGTATTC
genomic: GACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTGgtaagctgtt ... ctccatgcagCTTCATATTGCCTTCTGCATCTTTGCTTCAGTTGCTCCTCCAATTGTATTC
EST: gi|110699817|gb|EE077160.1|EE077160
EST:     GACTGATAGTGCTCTAAAAGT-CGGGGGGTTTTTCTTGTTTTACCTG                         CTTCATAT-GCCTTCTGCATCTTTGCTTCAGTTGCTCCTCCAAT
genomic: GACTGATAGTGCTCTAAA-GTTCGGGTGGTTTTTCTTGTTTTACCTGgtaagctgtt ... ctccatgcagCTTCATATTGCCTTCTGCATCTTTGCTTCAGTTGCTCCTCCAAT
EST: gi|71870410|gb|DT019465.1|DT019465
EST:     GACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTG                         CTTCATATTGCCTTCTGCATCTTTGCTTCAGTTGCTCCTCCAATTGTATTC
genomic: GACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTGgtaagctgtt ... ctccatgcagCTTCATATTGCCTTCTGCATCTTTGCTTCAGTTGCTCCTCCAATTGTATTC
EST: gi|110722937|gb|EE099679.1|EE099679
EST:     GACTGATAGTGCTCTAAAGTTCGGGTGGGTTTTCTTGTTTTAACGG                         CTTCATATTGCCT
genomic: GACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTGgtaagctgtt ... ctccatgcagCTTCATATTGCCT