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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACACTCGGAGAAACTTTAGTTAGACACAGAAAAAAACCTCGGGTGTATATTGGATGCATGAAATCTGGTCCAGTCCTTGCTCAGAAgtaagtgactttctttagattgttttggttacgtgaaactgtttagttcttagtttcttatttgtccatatttttgtaacag

Basic information

species Vitis vinifera
transcript Vv12s0059g00640.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0059g00640.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os03g38050.1 (Oryza sativa), 5'ss of exon 8
CAACACTCGGAGAAACTTTAGTTAGACACAGAAAAAAACCTCGGGTGTATATTGGATGCATGAAATCTGGTCCAGTCCTTGCTCAGAAgtaagtgactttctttagattgttttggttacgtgaaactgtttagttcttagtttcttatttgtccatatttttgtaacag
|||| || ||  | |  || | ||  ||  |    || ||||| |  || ||||| ||||||||||||||||||||||| ||||||||||||||  | |  |     ||||  ||  | | |  |  | || |     |       ||    |   | ||||  |  |||
CAACTCTTGGTAACATATTGGCTAAGCATCGGTCGAAGCCTCGAGCTTACATTGGTTGCATGAAATCTGGTCCAGTCCTGGCTCAGAAgtaagtcccatgtt----gttgtcatgtcttccttgatgttttaaacagctgaccaaataccaatttgttttttattctcag

upper sequence: Vv12s0059g00640.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os02g06840.2 (Oryza sativa), 5'ss of exon 9
CAACACTCGGAGAAACTTTAGTTAGACACAGAAAAAAACCTCGGGTGTATATTGGATGCATGAAATCTGGTCCAGTCCTTGCTCAGAAgtaagtgactttctttagattgttttggttacgtgaaactgtttagttcttagtttcttatttgtccatatttttgtaacag--------------------
||||||| ||| | | ||||  ||  ||   |   || ||  | || ||||||||||||||||||||||| || |||||  || |||||||||||  |  | |    ||   |    |   ||| | ||| |  ||     ||||| ||     || | |||  |||                       
CAACACTTGGACAGATTTTATCTAATCATGCATTGAAGCCCAGAGTATATATTGGATGCATGAAATCTGGACCTGTCCTAACTGAGAAgtaagtgcatcacatggttttaactgttctttctgacaatgtctcctttcct-tttctcatgccctcaaaatttgctaagttttgttaacccttgtctccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30137885|gb|CB923223.1|CB923223
EST:     CCTCGGGTGTATATTGGATGCATGAAATCTGGTCCAGTCCTTGCTCAGAA                         GGGAGTGAGATACCATGAACCCGAGTATTGGAAATTTGGTGAGGCAGGAAA
genomic: CCTCGGGTGTATATTGGATGCATGAAATCTGGTCCAGTCCTTGCTCAGAAgtaagtgact ... tttgtaacagGGGAGTGAGATACCATGAACCCGAGTATTGGAAATTTGGTGAGGCAGGAAA