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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTAATGGCAAAAGGTAGTGTTCCAATTGGTATCGGTAAGAACTCTCACATCAAAAGAGCGATCATCGACAAGAATGCTCGCATCGGGGACAATGTGAAGgttgtgattttaattaacttagcatggattatttttcatcaatttcgttttctactggtaatgttgctatgatgatgaggttgtgattttaatttagcgaagaaatttgttatttcag

Basic information

species Vitis vinifera
transcript Vv12s0057g01480.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0057g01480.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os08g25734.1 (Oryza sativa), 5'ss of exon 8
TCTAATGGCAAAAGGTAGTGTTCCAATTGGTATCGGTAAGAACTCTCACATCAAAAGAGCGATCATCGACAAGAATGCTCGCATCGGGGACAATGTGAAGgt-tgtgattttaattaacttagcatggattatttttcatcaatttcgttttctactggtaatgttgc-tatgatgatgaggttgtgattttaatttagcgaagaaatttgttatttcag
 ||    | ||||||| |  |||| |||||||| || ||||| |  ||||| | ||| || |||||||||||||||||||| || || || ||||||||||| |   |  || |||  |||| | |  |  ||||   ||   | |   ||  ||||  |  |  ||  | | |  ||  |||  |  |  |   ||  |                    
CCTTGGTGAAAAAGGTGGCATTCCCATTGGTATTGGGAAGAATTGCCACATTAGAAGGGCAATCATCGACAAGAATGCTCGTATTGGAGATAATGTGAAGgtattccaaattgattttcttatcgttaagcatttaatatgtttatatgttcttactttttttaatgaattttactattcggtctttctcatctcttctc--------------------

upper sequence: Vv12s0057g01480.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G163437_T01 (Zea mays), 5'ss of exon 8
TCTAATGGCAAAAGGTAGTGTTCCAATTGGTATCGGTAAGAACTCTCACATCAAAAGAGCGATCATCGACAAGAATGCTCGCATCGGGGACAATGTGAAGgttgtgattttaattaac-ttagcatggattatttttcatcaatttcgttttctactggtaatgttgctatgatgatgaggttgtgattttaatttagcgaagaaatttgttatttcag
 ||    | ||| ||| |  |||| |||||||| || ||||| || ||||||| || ||| ||||| |||||||||||||| || || || |||||||||||     ||  || | |  ||   | ||   |   |  ||   | |  |||| |||   | | | | | |  || ||    |||  || ||| |||  |     ||||           
CCTTGCCGAAAATGGTGGCATTCCCATTGGTATTGGGAAGAATTCACACATCAGAAAAGCAATCATTGACAAGAATGCTCGAATTGGAGATAATGTGAAGgt---atttcaaactgatgttctaacggtcaagaatatattggtctatttttttacc--ttaagataccac-ataatac--ttgatatgttattttctcctcttaatt-----------

upper sequence: Vv12s0057g01480.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA02G47460.1 (Glycine max), 5'ss of exon 8
TCTAATGGCAAAAGGTAGTGTTCCAATTGGTATCGGTAAGAACTCTCACATCAAAAGAGCGATCATCGACAAGAATGCTCGCATCGGGGACAATGTGAAGgttgtgattttaattaacttagcatggattatttttcatcaatttcgttttctactggtaatgttgctatgatgatgaggttgtgattttaatttagcgaagaaatttgttatttcag
|||    || ||||| ||||||||||||||||| || | ||||||||| |||||||| || || ||||||||||||||||| || ||||| ||||| |||||| | |  |     | |||    |  ||    ||   |     | |||||  | |  ||| |    | |  |    ||             |   |||  | |  ||          
TCTGGCTGCTAAAGGCAGTGTTCCAATTGGTATAGGCAGGAACTCTCATATCAAAAGGGCAATTATCGACAAGAATGCTCGAATTGGGGAAAATGTCAAGgttataacatcttcgatctttaattatatacaattctgtt--ccttgttttacattc-taaagccatttttttctcaagacaacag-----gtgaggcgcggtagctt----------

upper sequence: Vv12s0057g01480.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA14G01290.1 (Glycine max), 5'ss of exon 8
TCTAATGGCAAAAGGTAGTGTTCCAATTGGTATCGGTAAGAACTCTCACATCAAAAGAGCGATCATCGACAAGAATGCTCGCATCGGGGACAATGTGAAGgttgtgattttaattaacttagcatggattatttttcatcaatttcgttttctactggtaatgttgctatgatgatgaggttgtgattttaatttagcgaagaaatttgttatttcag
|||    || ||||| ||||||||||||||||| || | ||||||||| |||||||| || || || |||||||||||||| || ||||| ||||| |||||| |    |    ||   |   ||  | | || ||| |   |||    |||||       | || | | ||  |   |   |  ||  ||  ||   |  ||               
TCTGGCTGCCAAAGGCAGTGTTCCAATTGGTATAGGCAGGAACTCTCATATCAAAAGGGCAATTATTGACAAGAATGCTCGAATTGGGGAAAATGTCAAGgttatagcatcttcta---ttatatacaattttgttcgttg-ttttacattctaagccattttttcccaagacaacaggtgaggcatagtagcttttaggtgat--------------

upper sequence: Vv12s0057g01480.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT5G48300.1 (Arabidopsis thaliana), 5'ss of exon 7
TCTAATGGCAAAAGGTAGTGTTCCAATTGGTATCGGTAAGAACTCTCACATCAAAAGAGCGATCATCGACAAGAATGCTCGCATCGGGGACAATGTGAAGgttgtgattttaattaacttagcatggattatttttcatcaatttcgttttctactggtaatgttgctatgatgatgaggttgtg-attttaatttagcgaagaaatttgttatttcag
  |||  || ||||| ||||| || || ||||| || || ||||| ||||||||||| || ||||||||||| || || || ||||| |||||||| ||||||    |||  |||       ||   |  || |||    |  || |||   |||| |   || |  ||  |||     |||||| |  ||     ||                     
CTTAAGCGCGAAAGGAAGTGTACCCATAGGTATTGGGAAAAACTCGCACATCAAAAGGGCCATCATCGACAAAAACGCACGTATCGGTGACAATGTCAAGgttagtgtttatatttggaacacacacaggatgttt----agctttgttca-tacttgctctgctcttaaaatgtgtttgttgtggaccttggcacag---------------------

upper sequence: Vv12s0057g01480.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: PP1S76_105V6.1 (Physcomitrella patens), 5'ss of exon 8
TCTAATGGCAAAAGGTAGTGTTCCAATTGGTATCGGTAAGAACTCTCACATCAAAAGAGCGATCATCGACAAGAATGCTCGCATCGGGGACAATGTGAAGgttg-tgattttaattaacttagcatggattatttttcatcaattt-cgttttctactggtaatgttgctatgatgatgaggttgtgattttaatttagcgaagaaatttgttatttcag
  |  | || | |||| |  |||| || ||||| || || || ||     | |||||||| || |||||||||||||| || ||||| || ||||||||||| |   || |||  |   |||| |   | |   |   |||||     ||| |||   |   |      | || | |||  |||   ||   | | || ||                   
GTTGTTAGCCACAGGTGGCATTCCCATGGGTATTGGCAAAAATTCAGTTGTGAAAAGAGCAATTATCGACAAGAATGCACGAATCGGAGAAAATGTGAAGgtaggctatgttagatg--ttagaagttactgaatggaatcaaggcgtgttgtctttcgtgcacacaaatttgttcatgttgttcaaatccaactctatcgc------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30125071|gb|CB910410.1|CB910410
EST:     TCAAAAGAGCGATCATCGACAAGAATGCTCGCATTGGGGACAATGTGAAG                         ATCATCAATGGTGATAATGTGCAAGAAGCGGCCAGGGAAACGGATGGATAT
genomic: TCAAAAGAGCGATCATCGACAAGAATGCTCGCATCGGGGACAATGTGAAGgttgtgattt ... gttatttcagATCATCAATAGTGATAATGTGCAAGAAGCGGCAAGGGAAACGGATGGATAT
EST: gi|110688952|gb|EE068088.1|EE068088
EST:     TCAAAAGAGCGATCATCGACAAGAATGCTCGCATTGGGGACAATGTGAAG                         ATCATCAATGGTGATAATGTGCAAGAAGCGGCCAGGGAAACGGATGGATAT
genomic: TCAAAAGAGCGATCATCGACAAGAATGCTCGCATCGGGGACAATGTGAAGgttgtgattt ... gttatttcagATCATCAATAGTGATAATGTGCAAGAAGCGGCAAGGGAAACGGATGGATAT
EST: gi|110423492|gb|EC989838.1|EC989838
EST:     TCAAAAGAGCGATCATCGACAAGAATGCTCGCATCGGGGACAATGTGAAG                         ATCATCAATGGTGATAATGTGCAAGAAGCGGCCAGGGAAACGGATGGATAT
genomic: TCAAAAGAGCGATCATCGACAAGAATGCTCGCATCGGGGACAATGTGAAGgttgtgattt ... gttatttcagATCATCAATAGTGATAATGTGCAAGAAGCGGCAAGGGAAACGGATGGATAT
EST: gi|110378789|gb|EC943937.1|EC943937
EST:     TCAAAAGAGCGATCATCGACAAGAATGCTCGCATTGGGGACAATGTGAAG                         ATCATCAATGGTGATAATGTGCAAGAAGCGGCCAGGGAAACGGATGGATAT
genomic: TCAAAAGAGCGATCATCGACAAGAATGCTCGCATCGGGGACAATGTGAAGgttgtgattt ... gttatttcagATCATCAATAGTGATAATGTGCAAGAAGCGGCAAGGGAAACGGATGGATAT
EST: gi|352777901|gb|FQ466954.1|FQ466954
EST:     TCAAAAGAGCGATCATCGACAAGAATGCTCGCATCGGGGACAATGTGAAG                         ATCATCAATAGTGATAATGTGCAAGAAGCGGCAAGGGAAACGGATGGATAT
genomic: TCAAAAGAGCGATCATCGACAAGAATGCTCGCATCGGGGACAATGTGAAGgttgtgattt ... gttatttcagATCATCAATAGTGATAATGTGCAAGAAGCGGCAAGGGAAACGGATGGATAT
EST: gi|71889085|gb|DT038140.1|DT038140
EST:     TCAAAAGAGCGATCATCGACAAGAATGCTCGCATTGGGGACAATGTGAAG                         ATCATCAATGGTGATAATGTGCAAGAAGCGGCCAGGGAAACGGATGGATAT
genomic: TCAAAAGAGCGATCATCGACAAGAATGCTCGCATCGGGGACAATGTGAAGgttgtgattt ... gttatttcagATCATCAATAGTGATAATGTGCAAGAAGCGGCAAGGGAAACGGATGGATAT
EST: gi|352776770|gb|FQ472657.1|FQ472657
EST:     TCAAAAGAGCGATCATCGACAAGAATGCTCGCATCGGGGACAATGTGAAG                         ATCATCAATAGTGATAATGTGCAAGAAGCGGCAAGGGAAACGGATGGATAT
genomic: TCAAAAGAGCGATCATCGACAAGAATGCTCGCATCGGGGACAATGTGAAGgttgtgattt ... gttatttcagATCATCAATAGTGATAATGTGCAAGAAGCGGCAAGGGAAACGGATGGATAT
EST: gi|32245488|gb|CD711307.1|CD711307
EST:     TCAAAAGAGCGATCATCGACAAGAATGCTCGCATTGGGGACAATGTGAAG                         ATCATCAATGGTGATAATGTGCAAGAAGCGGCCAGGGAAACGGATGGATAT
genomic: TCAAAAGAGCGATCATCGACAAGAATGCTCGCATCGGGGACAATGTGAAGgttgtgattt ... gttatttcagATCATCAATAGTGATAATGTGCAAGAAGCGGCAAGGGAAACGGATGGATAT
EST: gi|83275545|gb|DV939553.1|DV939553
EST:     TCAAAAGAGCGATCATCGACAAGAATGCTCGCATTGGGGACAATGTGAAG                         ATCATCAATGGTGATAATGTGCAAGAAGCGGCCAGGGAAACGGATGGATAT
genomic: TCAAAAGAGCGATCATCGACAAGAATGCTCGCATCGGGGACAATGTGAAGgttgtgattt ... gttatttcagATCATCAATAGTGATAATGTGCAAGAAGCGGCAAGGGAAACGGATGGATAT
EST: gi|32245967|gb|CD711786.1|CD711786
EST:     TCAAAAGAGCGATCATCGACAAGAATGCTCGCATTGGGGACAATGTGAAG                         ATCATCAATGGTGATAATGTGCAAGAAGCGGCCAGGGAAACGGATGGATAT
genomic: TCAAAAGAGCGATCATCGACAAGAATGCTCGCATCGGGGACAATGTGAAGgttgtgattt ... gttatttcagATCATCAATAGTGATAATGTGCAAGAAGCGGCAAGGGAAACGGATGGATAT
EST: gi|33403137|gb|CF208764.1|CF208764
EST:     TCAAAAGAGCGATCATCGACAAGAATGCTCGCATTGGGGACAATGTGAAG                         ATCATCAATGGTGATAATGTGCAAGAAGCGGCCAGGGAAACGGATGGATAT
genomic: TCAAAAGAGCGATCATCGACAAGAATGCTCGCATCGGGGACAATGTGAAGgttgtgattt ... gttatttcagATCATCAATAGTGATAATGTGCAAGAAGCGGCAAGGGAAACGGATGGATAT
EST: gi|30253354|gb|CB970905.1|CB970905
EST:     TCAAAAGAGCGACCATCGACAAGAATGCTCGCATTGGGGACAATGTGAAG                         ATCATCAATGGTGATAATGGTGCAA
genomic: TCAAAAGAGCGATCATCGACAAGAATGCTCGCATCGGGGACAATGTGAAGgttgtgattt ... gttatttcagATCATCAATAGTGATAATG-TGCAA