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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACATTGAAATCCATCTCTTTTGGGCTGGAAAAGGGACTTGCTGCGTACCTGCTCAAGGGACATATGGACCTTCTATTTCAGCAATCAGTGCCACCCCAGgtaacgcaatcagaaactatttgatgcagatcagtaactaaaatgttgatccactttcatactgatactgagtgattactaaattttacacag

Basic information

species Vitis vinifera
transcript Vv12s0055g00660.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0055g00660.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os05g16824.3 (Oryza sativa), 5'ss of exon 17
TACATTGAAATCCATCTCTTTTGGGCTGGAAAAGGGACTTGCTGCGTACCTGCTCAAGGGACATATGGACCTTCTATTTCAGCAATCAGTGCCACCCCAGgtaacgcaatcagaaactatttgatgcagatcagtaactaaaatgttgatccactttcatactgatactgagtgattactaaattttacacag
| |||||| |||||||||||||||||||| ||||| ||||| || |||||| |||||||    || |||||  | || |||||| | ||   ||| ||| ||||      || ||  | |||  |  |   | | |||||  ||  |  |    | | ||    | |   | |   | |              
TTCATTGAGATCCATCTCTTTTGGGCTGGCAAAGGCACTTGTTGTGTACCTACTCAAGGTCACTACGGACCGACGATCTCAGCATTAAGCATCACTCCAAgtaag-----cacaatatttttagttga---ctgcaactaggattatattggcttcttatgtgtaaaaccattttcttcag------------

upper sequence: Vv12s0055g00660.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os05g16740.1 (Oryza sativa), 5'ss of exon 15
TACATTGAAATCCATCTCTTTTGGGCTGGAAAAGGGACTTGCTGCGTACCTGCTCAAGGGACATATGGACCTTCTATTTCAGCAATCAGTGCCACCCCAGgtaacgcaatcagaaactatttgatgcagatcagtaactaaaatgttgatccactttcatactgatactgagtgattactaaattttacacag
| | ||||||| |||||||||||||| || || || ||||| ||||||||| |||||||    ||||| ||    || |||||| | || | ||| ||  ||||       |   | ||||   |       | |  ||  ||  || ||   ||| ||    |  |   | | |||   |            
TTCCTTGAAATTCATCTCTTTTGGGCCGGCAAGGGCACTTGTTGCGTACCTACTCAAGGTTACTATGGCCCAATGATATCAGCATTAAGCGTCACTCCTAgtaag------aacgattattaagt-------aatttcttgaactttcattggcttccaataagtaaaacaattattttcag-----------

upper sequence: Vv12s0055g00660.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA09G15200.1 (Glycine max), 5'ss of exon 17
TACATTGAAATCCATCTCTTTTGGGCTGGAAAAGGGACTTGCTGCGTACCTGCTCAAGGGACATATGGACCTTCTATTTCAGCAATCAGTGCCACCCCAGgtaacgca-atcagaaac------------tatttgatgcagatcagta-actaaaatgttgatccactttcatactgatactgagtgattactaaattttacacag
||  | || |||||||||||||||||||||||||||||||| ||  |||| | |||||| || ||||| ||    |||||||| || ||||| | |||||||||  |  |  ||| ||            |||||| | || |    ||    ||||||||| |     ||  | ||  |  ||  |  | | || | |        
TATCTAGAGATCCATCTCTTTTGGGCTGGAAAAGGGACTTGTTGTATACCAGTTCAAGGTACTTATGGGCCCCTGATTTCAGCCATTAGTGCTATCCCAGgtaaaacttaaaagagacaggcttttcatatatttggtccaaacacatacgtgaaaatgttgttttttatttttcctatttttgc-tagtcattatagtaa------

upper sequence: Vv12s0055g00660.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA08G25600.1 (Glycine max), 5'ss of exon 17
TACATTGAAATCCATCTCTTTTGGGCTGGAAAAGGGACTTGCTGCGTACCTGCTCAAGGGACATATGGACCTTCTATTTCAGCAATCAGTGCCACCCCAGgtaacgcaatcagaaactatt--tgatgcagatcagtaactaa-aatgttgatccactttcatactgatactgagtgattact-aaattttacacag-----------------------------------
||  |||| || ||||||||||||||||||||||| ||||| ||| ||||  ||||||| || ||||| || |  |||  |||||||  ||| | |||||||||  | || | |||   ||  | ||  ||||   ||| ||  ||  ||     |     |  |   ||     |   || | ||| |||| | |                                    
TATCTTGAGATTCATCTCTTTTGGGCTGGAAAAGGTACTTGTTGCATACCAACTCAAGGTACTTATGGGCCCTTAATTCAAGCAATCCATGCTATCCCAGgtaatactatgaaaaaaatttggtaatttagatgtttaattactaacctttcattatgcataatcccttatcagctagatattcaaaatttatatatatttttaatttgataaattgttttgtgttgtacag

upper sequence: Vv12s0055g00660.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA08G25590.1 (Glycine max), 5'ss of exon 20
TACATTGAAATCCATCTCTTTTGGGCTGGAAAAGGGACTTGCTGCGTACCTGCTCAAGGGACATATGGACCTTCTATTTCAGCAATCAGTGCCACCCCAGgtaacgcaatcagaaac-tatttgatgcagatcagtaactaa-aatgttgatccactttcatactgatactgagtgattact-aaattttacacag-----------------------------------
||  |||| || ||||||||||||||||||||||| ||||| ||| ||||  ||||||| || ||||| || |  |||  |||||||  ||| |  ||||||||  | || | |||  |   | ||  ||||   ||| ||  ||  ||     |     |  |   ||     |   || | ||| |||| | |                                    
TATCTTGAGATTCATCTCTTTTGGGCTGGAAAAGGTACTTGTTGCATACCAACTCAAGGTACTTATGGGCCCTTAATTCAAGCAATCCATGCTATTCCAGgtaatactatgaaaaaaattggtaatttagatgtttaattactaacctttcattatgcataatcccttatcagctagatattcaaaatttatatatttttttaatttgatacattgttttgtgttgtacag