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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAAAGTCTGTAGTGTTGCATACATTGAATCGTGCTAGATTTTCTGTGGCTATAGACTCTTTCCTTAAGACAGgttaggatggttttttttcctttaaagattcatttttctccttaagttaccatggtcttatggttctttgattaaattcttactagaattcctatacgtgagcactatatgggcattttcattaatctaatggcttaattgtgctatatttccttttgcag

Basic information

species Vitis vinifera
transcript Vv12s0035g01870.t01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30304025|gb|CB980819.1|CB980819
EST:     ATTGAATCGTGCTAGATATTCTGTGGCTATAGACTGTTTCCTTAAGACAG                         GGCGAGTACCCTCATTGCAGGAGGGCAATATGAAGGAAAACATATTCAGTT
genomic: ATTGAATCGTGCTAGATTTTCTGTGGCTATAGACTCTTTCCTTAAGACAGgttaggatgg ... ccttttgcagGGCGAGTACCCTCATTGCAGGAGGGCAATATGAAGGAAAACATATTCAGTT
EST: gi|110711704|gb|EE088489.1|EE088489
EST:     ATTGAATCGTGCTAGATTTTCTGTGGCTATAGACTCTTTCCTTAAGACAG                         GGCGAGTACCCTCATTGCAGGAGGGCAATATGAAGGAAAACATATTCAGTT
genomic: ATTGAATCGTGCTAGATTTTCTGTGGCTATAGACTCTTTCCTTAAGACAGgttaggatgg ... ccttttgcagGGCGAGTACCCTCATTGCAGGAGGGCAATATGAAGGAAAACATATTCAGTT
EST: gi|161717211|gb|FC067217.1|FC067217
EST:     ATTGAATCGTGCTAGATTTTCTGTGGCTATAGACTCTTTCCTTAAGACAG                         GGCGAGTACCCTCATTGCAGGAGGGCAATATGAAGGAAAACATATTCAGTT
genomic: ATTGAATCGTGCTAGATTTTCTGTGGCTATAGACTCTTTCCTTAAGACAGgttaggatgg ... ccttttgcagGGCGAGTACCCTCATTGCAGGAGGGCAATATGAAGGAAAACATATTCAGTT