1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTTTAAGTCGAAGATGCGGTTTGAGCAACTTGAAGTCACACAGAATAAGCGGCAGAATGCTTGGCAGCAGTTCCAGACAACCAAAGGAAGGGCTAAAAAGgtgtgttgggagccatttttgcatttgcaaactgtcttctgttgctttattttattttttatttttttattattattatttttttatagcttgtggttgg...
species | Vitis vinifera |
transcript | Vv12s0035g01830.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GGCAGAATGCTTGGCAGCAGTTCCAGACAACCAAAGGAAGGGCTAAAAAG ATTGGTTTCTTTTCGGGCCGCAAGCGAGAAAGCATCTTCAAGTCTCCTGATEST: gi|45771787|gb|CN007639.1|CN007639
genomic: GGCAGAATGCTTGGCAGCAGTTCCAGACAACCAAAGGAAGGGCTAAAAAGgtgtgttggg ... aaattcccagATTGGTTTCTTTTCGGGCCGCAAGCGAGAAAGCATCTTCAAGTCTCCTGAT
EST: GGCAGAATGCTTGGCAGCAGTTCCAGACAACCAAAGGAAGGGCTAAAAAG ATTGGTTTCTTTTCGGGCCGCAAGCGAGAAAGCATCTTCAAGTCTCCTGATEST: gi|32271783|gb|CD720942.1|CD720942
genomic: GGCAGAATGCTTGGCAGCAGTTCCAGACAACCAAAGGAAGGGCTAAAAAGgtgtgttggg ... aaattcccagATTGGTTTCTTTTCGGGCCGCAAGCGAGAAAGCATCTTCAAGTCTCCTGAT
EST: GGCAGAATGCTTGGCAGCAGTTCCAGACAACCAAAGGAAGGGCTAAAAAG ATTGGTTTCTTTTCGGGCCGCAAGCGAGAAAGCATCTTCAAGTCTCCTGATEST: gi|30327885|gb|CD011147.1|CD011147
genomic: GGCAGAATGCTTGGCAGCAGTTCCAGACAACCAAAGGAAGGGCTAAAAAGgtgtgttggg ... aaattcccagATTGGTTTCTTTTCGGGCCGCAAGCGAGAAAGCATCTTCAAGTCTCCTGAT
EST: GGCAGAATGCTTGGCAGCAGTTCCAGACAACCAAAGGAAGGGCTAAAAAG ATTGGTTTCTTTTCGGGCCGCAAGCGAGAAAGCATCTTCAAGTCTCCTGATEST: gi|30252727|gb|CB970278.1|CB970278
genomic: GGCAGAATGCTTGGCAGCAGTTCCAGACAACCAAAGGAAGGGCTAAAAAGgtgtgttggg ... aaattcccagATTGGTTTCTTTTCGGGCCGCAAGCGAGAAAGCATCTTCAAGTCTCCTGAT
EST: GGCAGAATGCTTGGCAGCAGTTCCAGACAACCAAAGGAAGGGCTAAAAAG ATTGGTTTCTTTTCGGGCCGCAAGCGAGAAAGCATCTTCAAGTCTCCTGATEST: gi|30323816|gb|CD007078.1|CD007078
genomic: GGCAGAATGCTTGGCAGCAGTTCCAGACAACCAAAGGAAGGGCTAAAAAGgtgtgttggg ... aaattcccagATTGGTTTCTTTTCGGGCCGCAAGCGAGAAAGCATCTTCAAGTCTCCTGAT
EST: GGCAGAATGCTTGGCAGCAGTTCCAGACAACCAAAGGAAGGGCTAAAAAG ATTGGTTTCTTTTCGGGCCGCAAGCGAGAAAGCATCTTCAAGTCTCCTGATEST: gi|30129723|gb|CB915062.1|CB915062
genomic: GGCAGAATGCTTGGCAGCAGTTCCAGACAACCAAAGGAAGGGCTAAAAAGgtgtgttggg ... aaattcccagATTGGTTTCTTTTCGGGCCGCAAGCGAGAAAGCATCTTCAAGTCTCCTGAT
EST: GGCAGAATGCTTGGCAGCAGTTCCAGACAACCAAAGGAAGGGCTAAAAAG ATTGGTTTCTTTTCGGGCCGCAAGCGAGAAAGCATCTTCAAGTCTCCTGATEST: gi|83275932|gb|DV939940.1|DV939940
genomic: GGCAGAATGCTTGGCAGCAGTTCCAGACAACCAAAGGAAGGGCTAAAAAGgtgtgttggg ... aaattcccagATTGGTTTCTTTTCGGGCCGCAAGCGAGAAAGCATCTTCAAGTCTCCTGAT
EST: GGCAGAATGCTTGGCAGCAGTTCCAGACAACCAAAGGAAGGGCTAAAAAG ATTGGTTTCTTTTCGGGCCGCAAGCGAGAAAGCATCTTCAAGTCTCCTGAT
genomic: GGCAGAATGCTTGGCAGCAGTTCCAGACAACCAAAGGAAGGGCTAAAAAGgtgtgttggg ... aaattcccagATTGGTTTCTTTTCGGGCCGCAAGCGAGAAAGCATCTTCAAGTCTCCTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTAAGTCGAAGATGCGGTTTGAGCAACTTGAAGTCACACAGAATAAGCGGCAGAATGCTTGGCAGCAGTTCCAGACAACCAAAGGAAGGGCTAAAAAGgtgtgttgggagccatttttgcatttgcaaactgtcttctgttgctttattttattttttatttttttattattattatttttttatagcttgtggttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA