Sequence
atgc intronic sequence ATGC exonic sequenceTGAACAAATGGTTGACAGTGTTGAGGGCACAAGGGCTATTGCTTTGCAGCTTTGCCGTGAATTTGAGGATAAGTTTCTACAACATCTTGCACATGGTGAGgtgagtaattgcttttagaattggcatgtgcatatcttaatttgtgtgttaataatacaaaaggctaaacaaaaggaaaatgaccttcaggctgatgttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0035g01740.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os02g50550.1 (Oryza sativa), 5'ss of exon 8
TGAACAAATGGTTGACAGTGTTGAGGGCACAAGGGCTATTGCTTTGCAGCTTTGCCGTGAATTTGAGGATAAGTTTCTACAACATCTTGCACATGGTGAGgtgagtaattgcttttagaattggcat-gtgcatatcttaatttgtgtgttaataatacaaaaggctaaacaaaaggaaaatgaccttcaggctgatgttt
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AGAACAGATGGTATCAAGCGCTGAAGGAACCAGGGCTGTTGCTTTGGAGCTTTGCCGTGAATTCGAAGACAAGTTTCTTGCCCATGTTACTTCTGGTGAGgttagtgataagctcaagtatggtctttatatataccttaattagtatgtgccaaatg-aaatacctgattacaaggc---tgttattcaatcaaaag---
upper sequence: Vv12s0035g01740.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA07G40300.1 (Glycine max), 5'ss of exon 8
TGAACAAATGGTTGACAGTGTTGAGGGCACAAGGGCTATTGCTTTGCAGCTTTGCCGTGAATTTGAGGATAAGTTTCTACAACATCTTGCACATGGTGAGgtgagtaattgcttttaga-attggcatgtgcatatcttaatttgtgtgttaataatacaaaaggctaaacaaaaggaaaatgaccttc--aggctgatgttt--
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TGAACAAATGGTTAGTAGTTCTGAAGGTACAAGAGCTCTAGCCTTGCAGTTGTGCCGTGAATTTGAGGACAAATTTCTTCAACATCTTACTGGAGGCGAGgttagtattttttgtcatttatttacattt---tatagaagctagggtgc--atggtatttggtatttttttggggaaaattggatgttgtaagaagagattgga
upper sequence: Vv12s0035g01740.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA17G00480.1 (Glycine max), 5'ss of exon 8
TGAACAAATGGTTGACAGTGTTGAGGGCACAAGGGCTATTGCTTTGCAGCTTTGCCGTGAATTTGAGGATAAGTTTCTACAACATCTTGCACATGGTGAGgtgagtaattgcttttaga-attggcatgtgcatatcttaatttgtgtgttaataatacaaaaggctaaacaaaaggaaaatgaccttcaggctgatgttt----
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TGAACAAATGGTTAGTAGTTCCGAAGGTACAAGAGCTCTAGCCTTGCAGTTATGCCGTGAATTTGAGGACAAATTTCTTCAACATCTTACTGGAGGCGAGgttagtagtttttgtcatatatttacattt---tatagaagctagggtgc--atggtatttggtattttttggggggaaaactggatatcgtcagaagaaattgg
upper sequence: Vv12s0035g01740.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA07G40300.2 (Glycine max), 5'ss of exon 8
TGAACAAATGGTTGACAGTGTTGAGGGCACAAGGGCTATTGCTTTGCAGCTTTGCCGTGAATTTGAGGATAAGTTTCTACAACATCTTGCACATGGTGAGgtgagtaattgcttttagaattggcatgtgcatatcttaatttgtgtgttaataatacaaaaggctaaacaaaaggaaaatgaccttcaggctgatgttt
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----CAAATGGTTAGTAGTTCTGAAGGTACAAGAGCTCTAGCCTTGCAGTTGTGCCGTGAATTTGAGGACAAATTTCTTCAACATCTTACTGGAGGCGAGGTTAgtattt---tttgtcatt----tatttacatttta---tagaagctag------------------------------------------------
upper sequence: Vv12s0035g01740.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT1G10290.1 (Arabidopsis thaliana), 5'ss of exon 8
TGAACAAATGGTTGACAGTGTTGAGGGCACAAGGGCTATTGCTTTGCAGCTTTGCCGTGAATTTGAGGATAAGTTTCTACAACATCTTGCACATGGTGAGgtgagtaattgcttttagaattggcatgtgcatatcttaatttgtgtgttaataatacaaaaggctaaacaaaaggaaaatgaccttcaggctgatgttt--
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TGAACAACTAGTTAACAGTGCTGAAGGTACAAGGGCTATAGCTTTGGAGCTTTGCCGTGAGTTTGAAGACAAGTTTCTTCTGCACTTGGCTGGTGGTGAAgtaagtacattcttacaaaagttaactagatttagtcgaaaattcaagaatatagtgagagagaagaactcttcaaatattagcaatcagcc--atttcaga
upper sequence: Vv12s0035g01740.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: EFJ05623 (Selaginella moellendorffii), 5'ss of exon 8
TGAACAAATGGTTGACAGTGTTGAGGGCACAAGGGCTATTGCTTTGCAGCTTTGCCGTGAATTTGAGGATAAGTTTCTACAACATCTTGCACATGGTGAGgtgagtaattgcttttagaattggcatgtgcatat-cttaatttgtgtgttaataatacaaaaggctaaacaaaaggaaaatgaccttcaggctgatgttt
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TGAAAAGATGGTAGAAACGGAAGAAGGTACACGTGCGGTAGCACTAGAGCTTTGCCGTGAATTTGAGGACAAGTTTTTGGAGCATATCAACAGTGGAGAGgtgagct-ctgactttaatcttttaatctccatatgcttacgttatatacag-------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30298644|gb|CB975438.1|CB975438EST: CTAC-ACATCTTGCACATGGTGAG GGTAGCGGTTGGAAAGTTGTTGCAAGTTTTGAAGGCAATTTCCCCAACAGG
genomic: CTACAACATCTTGCACATGGTGAGgtgagtaatt ... ttctttgcagGGTAGCGGTTGGAAAGTTGTTGCAAGTTTTGAAGGCAATTTCCCCAACAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAACAAATGGTTGACAGTGTTGAGGGCACAAGGGCTATTGCTTTGCAGCTTTGCCGTGAATTTGAGGATAAGTTTCTACAACATCTTGCACATGGTGAGgtgagtaattgcttttagaattggcatgtgcatatcttaatttgtgtgttaataatacaaaaggctaaacaaaaggaaaatgaccttcaggctgatgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggaaaa