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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAGACAGAATCCAACACAGATTGTCACTGAAATGTGTGGATTTGTAACCATTCTTTCTGGAACTTTTCTTCTTCACAAAACAAAGGACTTGTCTGATGgtatgctttctacacttatggtgatctttttattgttgatgctgttactaggccactcaccaggaacttgttgctcatggatcttatactttatttttgtgaaaaatgaaaactaaaggaagagaaaatcttcggggtttactatccatttgttatttaatttttggctttctaaaatgtggatcatttacag

Basic information

species Vitis vinifera
transcript Vv12s0035g00720.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0035g00720.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA16G00560.1 (Glycine max), 5'ss of exon 8
GATAGACAGAATCCAACACAGATTGTCACTGAAATGTGTGGATTTGTAACCATTCTTTCTGGAACTTTTCTTCTTCACAAAACAAAGGACTTGTCTGATGgtatgctttctacacttatggtgatctttttattgttgatgctgttactaggccactcaccaggaacttgttgctcatggatcttatactttatttttgtgaaaaatgaaaactaaaggaagagaaaatcttcggggtttactatccatttgttatttaatttttggctttctaaaatgtggatcatttacag
|||||||| | |||||||||  || |||| ||||| ||||| ||||| |||||||| || ||||||||||||||||||||||| |||||  || ||||||||||| | |           |||||| |  ||| || |    | | |     |     |  |    || || |||||        || |  | ||  |||      |  ||       ||   ||    ||| |    |   | | ||| ||                                         
GATAGACAAAGTCCAACACAAGTTATCACAGAAATATGTGGGTTTGTGACCATTCTATCAGGAACTTTTCTTCTTCACAAAACTAAGGATATGGCTGATGgtatgatct----------agtgatcctactatagtagcaatt-tcatgtaactttagattacactctcgt-gctcac-------atgcacttttcgtgtagggccttgaagtcttcagatatga----ctttgttaatatatcttcatgtgcag--------------------------------------

upper sequence: Vv12s0035g00720.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA12G28940.1 (Glycine max), 5'ss of exon 8
GATAGACAGAATCCAACACAGATTGTCACTGAAATGTGTGGATTTGTAACCATTCTTTCTGGAACTTTTCTTCTTCACAAAACAAAGGACTTGTCTGATGgtatgctttc-tacacttatggtgatctttttatt--gttgatgctgttactaggccactcaccaggaacttgtt-gctcatggatc---ttatactttatttttgtgaaaaatgaaaactaaaggaagagaaaatcttcggggtttactatccatttgttatttaatttttggctttctaaaatgtggatcatttacag
|||||||| | |||||||||  || |||| ||||| ||||| ||||| |||||||| || ||||||||||||||||||||||| |||||  || ||||||||||| | |  |   | ||  ||     ||| ||     |   | |   |||      |||||  | |  || ||    ||||  |    | ||| ||| ||  |||| |                                                                                          
GATAGACAAAGTCCAACACAAGTTATCACAGAAATATGTGGGTTTGTGACCATTCTATCAGGAACTTTTCTTCTTCACAAAACTAAGGATATGGCTGATGgtatgatctagtgatcctacagtagcaatttcatgtaactttagattacactctcgtgctcacatgcactttcttcagacatgactttgttaatattttcttcatgtgcag-----------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110396013|gb|EC961687.1|EC961687
EST:     TCTTCTTCACAAAACAAAGGACTTGTCTGATG                         GCCTGTCAACGTCTTTGTCCATGAGACTTTCTAAGCATATAGAAGAGGATG
genomic: TCTTCTTCACAAAACAAAGGACTTGTCTGATGgtatgctttc ... tcatttacagGCCTGTCAACGTCTTTGTCCATGAGACTTTCTAAGCATATAGAAGAGGATG