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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTAACATGCAAACATAAATACCAAGTGGTTGAGAAAACACAAGCCACAATTGATGCAGCAATGCTTAAAGGGATACCCAGCAACATTGACCTTTTCAAGgttgggccgtcatttcatttatttttattttcaatcctaatttcttttctttttcccttttttgttgttgtttagttttttcattaagtgtttctagtgc...

Basic information

species Vitis vinifera
transcript Vv12s0034g01220.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0034g01220.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA15G05220.1 (Glycine max), 5'ss of exon 6
GGTAACATGCAAACATAAATACCAAGTGGTTGAGAAAACACAAGCCACAATTGATGCAGCAATGCTTAAAGGGATACCCAGCAACATTGACCTTTTCAAGgttgggccg-tcatttcatttatttttattttcaatcctaatttcttttctttttcccttttttgttgttgtttagttttttcattaagtgtttctagtgc-
   |||||||||||| || ||||| || || ||||| || |||||||| |||||||| ||||  ||  |||| ||||||||||||||||| |||||||||||||||  | | |  |   | ||     ||   ||   ||| |   |     || |    || |||||   |    |||| ||| |  | | ||  |     
AAAAACATGCAAACAAAAGTACCACGTTGTGGAGAAGACTCAAGCCACCATTGATGCTGCAACTCTACAAGGCATACCCAGCAACATTGATCTTTTCAAGgttgggatgcttaacttgctcatcacctttgataaatttaagtaactagtaattactagattatgttgggatc--attttgtcagtgtgcggttaaatgatg

upper sequence: Vv12s0034g01220.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA08G19800.2 (Glycine max), 5'ss of exon 9
GGTAACATGCAAACATAAATACCAAGTGGTTGAGAAAACACAAGCCACAATTGATGCAGCAATGCTTAAAGGGATACCCAGCAACATTGACCTTTTCAAGgttgggccgtca--tttcatttatttttattttcaatcctaatttcttttctttttcccttttttgttgttgtttagttt-tttcattaagtgtttctagtgc
   |||| |||||||||| |||||  | || ||||| || |||||||| |||||||| ||||  ||  |||| ||||||||||||||||| ||||||||||||||    | |  || |  || | ||  ||   |||  ||| |   |      | |    || || |  ||   ||||     |||| |  |||   |    
AAAAACAAGCAAACATAAGTACCACATTGTGGAGAAGACTCAAGCCACCATTGATGCTGCAACTCTACAAGGCATACCCAGCAACATTGATCTTTTCAAGgttggatgcttaacttgctcttgtcttctttgataattttaagtaactagtaactactagattatgattgtggcaagttggcagcattcaaagttcaaaa---

upper sequence: Vv12s0034g01220.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT1G71240.1 (Arabidopsis thaliana), 5'ss of exon 8
GGTAACATGCAAACATAAATACCAAGTGGTTGAGAAAACACAAGCCACAATTGATGCAGCAATGCTTAAAGGGATACCCAGCAACATTGACCTTTTCAAGgttgggccgtcatttcatt--tatttttattttcaatcctaatttcttttctttttcccttttttgttgttgtttagttttttcattaagtgtttctagtgc
 | |||||| | ||| |||||| | ||||| || ||||| |||||||| |||||||| ||||   | ||||||||||| || ||||||||||| || |||||    |  |   | ||||  || ||||  |   ||   |  |||      |||     ||  |  |  ||    |  |||    |   ||||   | |   
AGAAACATGTAGACAAAAATACAAGGTGGTCGAAAAAACTCAAGCCACTATTGATGCTGCAACTATCAAAGGGATACCTAGTAACATTGACCTCTTTAAGgtaacactttttctccattgatagttttgctacaaacattgttttggacggtttcctaattcgtcatgtttagacaactttcatctcttgtgtcaatgga--