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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATGGCAGATCGCATTATTGGAATGCGAACTGCTTTACGAGAAAACCTAGAGAAGTTGGGGTCCCCCCTGTCTTGGGAGCACATTACTAACCAGgtattgtagaatttgtcaatttatttgttttactcatttattttcctttccacatttcttcaaatgcttacagaccttgctgattcttgcaaacag

Basic information

species Vitis vinifera
transcript Vv12s0028g01820.t01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27585112|gb|CB007807.1|CB007807
EST:     ACCTAGAGAAGTTGGGGTCCCCCCTGTCTTGGGAGCACATTACTAACCAG                         ATTGGCATGTTCTGCTACAGTGGTTTGACACCTGAACAGGTTGATCGAATG
genomic: ACCTAGAGAAGTTGGGGTCCCCCCTGTCTTGGGAGCACATTACTAACCAGgtattgtaga ... ttgcaaacagATTGGCATGTTCTGCTACAGTGGTTTGACACCTGAACAGGTTGATCGAATG
EST: gi|27585716|gb|CB008411.1|CB008411
EST:     ACCTAGAGAAGTTGGGGTCCCCCCTGTCTTGGGAGCACATTACTAACCAG                         ATTGGCATGTTCTGCTACAGTGGTTTGACACCTGAACAGGTTGATCGAATG
genomic: ACCTAGAGAAGTTGGGGTCCCCCCTGTCTTGGGAGCACATTACTAACCAGgtattgtaga ... ttgcaaacagATTGGCATGTTCTGCTACAGTGGTTTGACACCTGAACAGGTTGATCGAATG
EST: gi|34364185|gb|CF405770.1|CF405770
EST:     GTCCCCCCTGTCTTGGGAGCACATTACTAACCAG                         ATTGGCATGTTCTGCTACAGTGGTTTGACACCTGAACAGGTTGATCGAATG
genomic: GTCCCCCCTGTCTTGGGAGCACATTACTAACCAGgtattgtaga ... ttgcaaacagATTGGCATGTTCTGCTACAGTGGTTTGACACCTGAACAGGTTGATCGAATG
EST: gi|83274567|gb|DV938664.1|DV938664
EST:     CCCTGTCTTGGGAGCACATTACTAACCAG                         ATTGGCATGTTCTGCTACAGTGGTTTGACACCTGAACAGGTTGATCGAATG
genomic: CCCTGTCTTGGGAGCACATTACTAACCAGgtattgtaga ... ttgcaaacagATTGGCATGTTCTGCTACAGTGGTTTGACACCTGAACAGGTTGATCGAATG
EST: gi|45771758|gb|CN007610.1|CN007610
EST:     GAGCACA-TACTAACCAG                         ATTGGCATG-TCTGCTACAGTGGTTTGACACCTGAACAGGTTGATCGAATG
genomic: GAGCACATTACTAACCAGgtattgtaga ... ttgcaaacagATTGGCATGTTCTGCTACAGTGGTTTGACACCTGAACAGGTTGATCGAATG
EST: gi|34545604|gb|CF513836.1|CF513836
EST:     CTAGAGAAAGT-GGGGTCCCCCCTGTCTTGGGAGCACATTACTAACCCNG                         AT-GGCATGTTCTGCTACAGTGGTTTGACACCTGA
genomic: CTAGAGAA-GTTGGGGTCCCCCCTGTCTTGGGAGCACATTACTAACCA-Ggtattgtaga ... ttgcaaacagATTGGCATGTTCTGCTACAGTGGTTTGACACCTGA
EST: gi|34545689|gb|CF513921.1|CF513921
EST:     ACCTAGAGAAGTTGGGGTCCCCCCTGTCTTGGGAGCACATTACTAACCAG                         ATTGGCATGTTCTGCTACAGTGGTTTGACACCTGAACAGGTTGATCGAATG
genomic: ACCTAGAGAAGTTGGGGTCCCCCCTGTCTTGGGAGCACATTACTAACCAGgtattgtaga ... ttgcaaacagATTGGCATGTTCTGCTACAGTGGTTTGACACCTGAACAGGTTGATCGAATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTATGGCAGATCGCATTATTGGAATGCGAACTGCTTTACGAGAAAACCTAGAGAAGTTGGGGTCCCCCCTGTCTTGGGAGCACATTACTAACCAGgtattgtagaatttgtcaatttatttgttttactcatttattttcctttccacatttcttcaaatgcttacagaccttgctgattcttgcaaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA