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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAACTCCTTCCTGGTGGTCATGGGCTAATGGTCCGAGGTTACATCCCTGTTATAAACACCCTCGCAAAAGGTCTCGACATCCACTTGAACCACAGgtattaatcaatatttatatagtcctgttaatttaatcatgtatctgttcattgctcagccgcattttctattcatacag

Basic information

species Vitis vinifera
transcript Vv12s0028g01120.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0028g01120.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA18G14620.1 (Glycine max), 5'ss of exon 8
-GAAGAACTCCTTCCTGGTGGTCATGGGCTAATGGTCCGAGGTTACATCCCTGTTATAAACACCCTCGCAAAAGGTCTCGACATCCACTTGAACCACAGgtattaatcaatatttatatagtcctgttaatttaatcatgtatctgttcatt-gctcagccgcattttcta-ttcatacag-------------
 || |  || || |||||||||||||| || |||||||| |||||| | ||||||||||| ||||| || || || || || || | ||||   ||||||||   || | |  ||  |   || | || |     | |||||    ||| ||   | |     | || ||   |     |              
GGAGGTGCTGCTCCCTGGTGGTCATGGTCTTATGGTCCGTGGTTACTTGCCTGTTATAAATACCCTAGCCAAGGGACTTGATATTCTCTTGGGGCACAggtagatattatt--ttgaactatcatttttagaattttatgtactatttcgtttagttaaatttacttactggcttgggtaatgcccccttttca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110718353|gb|EE095090.1|EE095090
EST:     CCTGTTATAAACACCCTCGCAAAAGGTCTCGACATCCACTTGAACCACAG                         GGTTACAAAAATAGTAAGGCGTTATAATGGAGTCAAGGTAACAGTAGAAGA
genomic: CCTGTTATAAACACCCTCGCAAAAGGTCTCGACATCCACTTGAACCACAGgtattaatca ... attcatacagGGTTACAAAAATAGTAAGGCGTTATAATGGAGTCAAGGTAACAGTAGAAGA
EST: gi|110718889|gb|EE096234.1|EE096234
EST:     CCTGTTATAAACACCCTCGCAAAAGGTCTCGACATCCACTTGAACCACAG                         GGTTACAAAAATAGTAAGGCGTTATAATGGAGTCAAGGTAACAGTAGAAGA
genomic: CCTGTTATAAACACCCTCGCAAAAGGTCTCGACATCCACTTGAACCACAGgtattaatca ... attcatacagGGTTACAAAAATAGTAAGGCGTTATAATGGAGTCAAGGTAACAGTAGAAGA
EST: gi|110377101|gb|EC942162.1|EC942162
EST:     CCTGTTATAAACACCCTCGCAAAAGGTCTCGACATCCACTTGAACCACAG                         GGTTACAAAAATAGTAAGGCGTTATAATGGAGTCAAGGTAACAGTAGAAGA
genomic: CCTGTTATAAACACCCTCGCAAAAGGTCTCGACATCCACTTGAACCACAGgtattaatca ... attcatacagGGTTACAAAAATAGTAAGGCGTTATAATGGAGTCAAGGTAACAGTAGAAGA
EST: gi|110698188|gb|EE075460.1|EE075460
EST:     CCTGTTATAAACACCCTCGCAAAAGGTCTCGACATCCACTTGAACCACAG                         GGTTACAAAAATAGTAAGGCGTTATAATGGAGTCAAGGTAACAGTAGAAGA
genomic: CCTGTTATAAACACCCTCGCAAAAGGTCTCGACATCCACTTGAACCACAGgtattaatca ... attcatacagGGTTACAAAAATAGTAAGGCGTTATAATGGAGTCAAGGTAACAGTAGAAGA
EST: gi|110388093|gb|EC952810.1|EC952810
EST:     CCTGTTATAAACACCCTCGCAAAAGGTCTCGACATCCACTTGAACCACAG                         GGTTACAAAAATAGTAAGGCGTTATAATGGAGTCAAGGTAACAGTAGAAGA
genomic: CCTGTTATAAACACCCTCGCAAAAGGTCTCGACATCCACTTGAACCACAGgtattaatca ... attcatacagGGTTACAAAAATAGTAAGGCGTTATAATGGAGTCAAGGTAACAGTAGAAGA