Sequence
atgc intronic sequence ATGC exonic sequenceGTTTGTTCTTGCTGTGGAAAATGTTTCTCCAGGAACAAAGTTTGATCCTGTTCCTGTCAGTATTCCTGGGATTCTCATCACAGAAGTCAGCAAATCAATGgtaaatatcttaattcttcttctttaatgatatatatttccagtaggtagatagtggtccagtgtgactggcaccatctggaacatcccgctatcagttg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0103g00550.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os06g48650.3 (Oryza sativa), 5'ss of exon 7
GTTTGTTCTTGCTGTGGAAAATGTTTCTCCAGGAACAAAGTTTGATCCTGTTCCTGTCAGTATTCCTGGGATTCTCATCACAGAAGTCAGCAAATCAATGgtaaatatcttaattcttcttctttaatgatatatatttccagta-ggtagatagtggtccagtgtgactggcaccatctggaacatcccgctatcagttg--------
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TTTTATTGTTGCTGTGGAGAATAGTTACCCAGGAACAAAATTTGATCCTGTACCTGTCAGCATGCCTGGTATTCTCATCACAGATGTCAGCAGAACAAAGgta------cta--cctccgtcccaaaatgtagctatttctagcacagtactttgtcccaaaatgaagctatttttctacctaccttctc-ctctcaaccaatcacaac
upper sequence: Vv11s0103g00550.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G099452_T02 (Zea mays), 5'ss of exon 8
GTTTGTTCTTGCTGTGGAAAATGTTTCTCCAGGAACAAAGTTTGATCCTGTTCCTGTCAGTATTCCTGGGATTCTCATCACAGAAGTCAGCAAATC---AATGgtaaatatctta---attcttcttctttaatgatatatatttccagtaggtagatagtggtccagtgtgactggcaccatctggaacatcccgctatcagttg
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CTTTGTTGTTGCTGTGGAGAATAGTTACCCAGGAACAAAATTTGACCCTGTACCAGTCAGCATCCCTGGAATTCTCATCACAGATGTCAGCAAAACCGAGgtattatacgtctagcagaaccttattgcatatttgcttatgattgccatgcgtaggcaa-----catcatacatagaagtatgaaaaa-atgagactgtatattc
upper sequence: Vv11s0103g00550.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G114394_T02 (Zea mays), 5'ss of exon 8
GTTTGTTCTTGCTGTGGAAAATGTTTCTCCAGGAACAAAGTTTGATCCTGTTCCTGTCAGTATTCCTGGGATTCTCATCACAGAAGTCAGCAAATCAATGgtaaatatcttaattcttcttctttaatgatatatatttccagtaggtagatagtg--gtccagtgtgactggcaccatctggaacatcccgctatcagttg-
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CTTTGTTGTTGCTGTGGAGAATAATTACCCAGGAACAAAATTTGACCCTGTACCATTCAGCATCCCTGGAATTCTCATCACAGATGTCAGCAAAACGGAGgtat---tgcagagccttatttcatatttgcatatggttgccacttgtagacaacatcatacatagacatatggaaaaatgagactgtatattcatgaataga
upper sequence: Vv11s0103g00550.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA15G17830.1 (Glycine max), 5'ss of exon 7
GTTTGTTCTTGCTGTGGAAAATGTTTCTCCAGGAACAAAGTTTGATCCTGTTCCTGTCAGTATTCCTGGGATTCTCATCACAGAAGTCAGCAAATCAATGgtaaatatcttaattcttcttctttaatgatatatatttccagtaggtagatagtggtccagtgtgactggcaccatctggaacatcccgctatcagttg-
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GTTTGTTCTTTGTGTTGAAAATGTTTCTCCTGGAACAAAATTTGATCCAGTCCCTGTTGGCATTCCTGGGATTCTTATCACAGATGCCAGCAAATCAAAGgtacttgaatcacatctaggtagataacgatgatgaatgctaactgtttccatctgttttcttgtagccgatgatttactacacagcctaat-tcagctgc
upper sequence: Vv11s0103g00550.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA09G06640.1 (Glycine max), 5'ss of exon 8
GTTTGTTCTTGCTGTGGAAAATGTTTCTCCAGGAACAAAGTTTGATCCTGTTCCTGTCAGTATTCCTGGGATTCTCATCACAGAAGTCAGCAAATCAATGgtaaatatcttaattcttcttctttaatgatatatatttccagtaggtagatagtggtccagtgtgactggcaccatctggaacatcccgctat-cagttg
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ATTTGTTCTTTGTGTTGAAAATGTTTCCCCTGGAACAAAATTTGATCCCGTCCCTGTTGGCATTCCTGGGATTCTTATCACAGATGCCAGCAAATCAAAGgtacttgaatcacatctaggtagatatcgatgatgaatgctgactgtttccatctgttttcttgtagccgattatttactccacagcctaatattcagtt-
upper sequence: Vv11s0103g00550.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA13G00580.1 (Glycine max), 5'ss of exon 7
GTTTGTTCTTGCTGTGGAAAATGTTTCTCCAGGAACAAAGTTTGATCCTGTTCCTGTCAGTATTCCTGGGATTCTCATCACAGAAGTCAGCAAATCAATGgtaaatatcttaattcttcttctttaatgatatatatttccagtaggtagatagtggtcca-gtgtgactggcaccatctggaacatcccgctat----cagttg---
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ATTTGTTCTTTGTGTTGAAAACAATTCCCCAGGAACAAAATTTGATCCAGTCCCTGTTGGTCTTCCTGGGATTCTCATCACAGATGTCAGCAATTCTAAGgtaa---tccga----cacatctgtactggtgtatatatgcag-aggtagattgagtttgatgctaaatccattttctcttggcccttaatttattccacagtcaagt
upper sequence: Vv11s0103g00550.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA17G06740.1 (Glycine max), 5'ss of exon 7
GTTTGTTCTTGCTGTGGAAAATGTTTCTCCAGGAACAAAGTTTGATCCTGTTCCTGTCAGTATTCCTGGGATTCTCATCACAGAAGTCAGCAAATCAATGgtaaatatcttaattcttcttctttaatgatatatatttccagtaggtagatagtggtccagtgtgactggcaccatctggaacatcccgctatcagttg----------
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ATTTGTTCTTTGTGTTGAAAACATTTCCCTAGGAACAAAATTTAATCCAGTTCCTGTTGGCCTTCCTGGGATTCTCATCATAGATGTCAGCAATTCAAAGgtaatcagactcat-------ctgtactggtgtatctatgtag-aggtagatgtttga--agctaaatccattttctcttggcccttaattttttggctgaattgcagtt
upper sequence: Vv11s0103g00550.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT4G30020.1 (Arabidopsis thaliana), 5'ss of exon 8
GTTTGTTCTTGCTGTGGAAAATGTTTCTCCAGGAACAAAGTTTGATCCTGTTCCTGTCAGTATTCCTGGGATTCTCATCACAGAAGTCAGCAAATCAATGgtaaatatcttaattcttcttctttaatgatatatatttccagtaggtagatagtggtccagtgtgactggcaccatctggaacatcccgctatcagttg
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TTTCGTTCTTGTTGTCGAAAACGTTTCTCCAGGAACAAAATTCGATCCCGTTCCTTCTTGCATTCCTGGGATTCTGATTACAGATGTCTCTAAGTCAATGgtaaaa--tatagttttgttgcgttcactatacagttatttcctccctcgtcttttccttaacttgg--aatgccattttttcttctctag---------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161707600|gb|FC055656.1|FC055656EST: TTCCTGTCAGTATTCCTGGGATTCTCATCACAGAAGTCAGCAAATCAATG GATCTTATAGAGTACTATAATACATCCACTTCAAGAGATTGGACTGGACGA
genomic: TTCCTGTCAGTATTCCTGGGATTCTCATCACAGAAGTCAGCAAATCAATGgtaaatatct ... tttacttcagGATCTTATAGAGTACTATAATACATCCACTTCAAGAGATTGGACTGGACGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTTGTTCTTGCTGTGGAAAATGTTTCTCCAGGAACAAAGTTTGATCCTGTTCCTGTCAGTATTCCTGGGATTCTCATCACAGAAGTCAGCAAATCAATGgtaaatatcttaattcttcttctttaatgatatatatttccagtaggtagatagtggtccagtgtgactggcaccatctggaacatcccgctatcagttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT