1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCCTTGTTATAAGGACATGAGTTTTTGGATTAATGAGTCATTCACAGAAAACAATTTATGTGAGGTTGTTAGAGGAGTTGCTGGAGATCTTGTCGAGGAGgtatgcctttttatgtttcttcctgtaaattgttcattagctatagatctgttcatggttcactaggtagaattttcctaaccatttttatagttacact...
species | Vitis vinifera |
transcript | Vv11s0103g00120.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ACAATTTATGTGAGGTTGTTAGAGGAGTTGCTGGAGATCTTGTCGAGGAG GTGCAATTGATTGACAATTTCACCAACAAGAAAGGAATGACCAGTCAATGTEST: gi|352764071|gb|FQ467641.1|FQ467641
genomic: ACAATTTATGTGAGGTTGTTAGAGGAGTTGCTGGAGATCTTGTCGAGGAGgtatgccttt ... tgactgccagGTGCAATTGATTGACAATTTCACCAACAAGAAAGGAATGACCAGTCAATGT
EST: ACAATTTATGTGAGGTTGTTAGAGGAGTTGCTGGAGATCTTGTCGAGGAG GTGCAATTGATTGACAATTTCACCAACAAGAAAGGAATGACCAGTCAATGTEST: gi|33406146|gb|CF211773.1|CF211773
genomic: ACAATTTATGTGAGGTTGTTAGAGGAGTTGCTGGAGATCTTGTCGAGGAGgtatgccttt ... tgactgccagGTGCAATTGATTGACAATTTCACCAACAAGAAAGGAATGACCAGTCAATGT
EST: ACAATTTATGTGAGGTTGTTAGAGGAGTTGCTGGAGATCTTGTCGAGGAG GTGCAATTGATTGACAATTTCACCAACAAGAAAGGAATGACCAGTCAATGTEST: gi|37184712|gb|CF604066.1|CF604066
genomic: ACAATTTATGTGAGGTTGTTAGAGGAGTTGCTGGAGATCTTGTCGAGGAGgtatgccttt ... tgactgccagGTGCAATTGATTGACAATTTCACCAACAAGAAAGGAATGACCAGTCAATGT
EST: ACAATTTATGTGAGGTTGTTAGAGGAGTTGCTGGAGATCTTGTCGAGGAG GTGCAATTGATTGACAATTTCACCAACAAGAAAGGAATGACCAGTCAATGT
genomic: ACAATTTATGTGAGGTTGTTAGAGGAGTTGCTGGAGATCTTGTCGAGGAGgtatgccttt ... tgactgccagGTGCAATTGATTGACAATTTCACCAACAAGAAAGGAATGACCAGTCAATGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTTGTTATAAGGACATGAGTTTTTGGATTAATGAGTCATTCACAGAAAACAATTTATGTGAGGTTGTTAGAGGAGTTGCTGGAGATCTTGTCGAGGAGgtatgcctttttatgtttcttcctgtaaattgttcattagctatagatctgttcatggttcactaggtagaattttcctaaccatttttatagttacact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggtagaa