Sequence
atgc intronic sequence ATGC exonic sequenceCATTCTGGGAGTTGCCTATGGTTTCCTTGCTGCCACCATGGCCATTCAAAGAATTTGGCAGAGGCATTACCACATACTAACCAAAAGGGAGCTCACGAAGgtaagcttccagggcacattcttgttaataactgtggttatttcttgtaagaatgataccaattttagaacagttatcatattaatatggttacatgaaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g04730.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os01g42500.1 (Oryza sativa), 5'ss of exon 5
CATTCTGGGAGTTGCCTATGGTTTCCTTGCTGCCACCATGGCCATTCAAAGAATTTGGCAGAGGCATTACCACATACTAACCAAAAGGGAGCTCACGAAGgtaagc--ttccagggcacatt-cttgttaataactgtggttatttcttgtaagaatgataccaatt--ttagaacagtta-----tcatattaatatggttacatgaaa-----
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TATACTTGGAGTTGCATATGGCTTCTTCGCTGCAACCGTAGCCGTCCAGAGGATCTTGCAGAGACACTATCACATACTTACCAAAAGGGAGCTCACAAAGgtaaacactgcttgaagtcatcacttgtcatttcctctg---aaccagtgaaatagtagtatttgttaatcagctcgtttaatactctgtacttccactgtttgatgatgtgcag
upper sequence: Vv11s0016g04730.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G034536_T02 (Zea mays), 5'ss of exon 4
CATTCTGGGAGTTGCCTATGGTTTCCTTGCTGCCACCATGGCCATTCAAAGAATTTGGCAGAGGCATTACCACATACTAACCAAAAGGGAGCTCACGAAGgtaagcttccagggcacattcttgttaat---aactgtggttatttcttgtaagaatgataccaattttagaacagttatcatattaatatggttacatgaaa----------
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CATCCTTGGAGTTGCCTACGGGTTTCTTGCGGCGACTGTGGCCATCCAGAGGATCTGGCAGCGGCACTATCACATACTTACCAAGAAGGAGCTCACGAAGgcaag-ttatataacctgctttgcttaaattaaactgttccgcactctaatttgctccgagccagggaaagag-agtaat-atattcttgccgttgcgtgtgatggcgcacag
upper sequence: Vv11s0016g04730.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA17G12750.1 (Glycine max), 5'ss of exon 6
CATTCTGGGAGTTGCCTATGGTTTCCTTGCTGCCACCATGGCCATTCAAAGAATTTGGCAGAGGCATTACCACATACTAACCAAAAGGGAGCTCACGAAGgta--agcttccagggcacattcttg------ttaataactgtggttatttc---ttgtaagaatga-taccaattttagaacagttatcatattaatatggtta----catgaaa----------------------------------------------------------------------
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AATTCTTGGTATAGCTTATGGTTTTCTTGCTGCCACCATGGCCATTCAAAGAATTTGGCAGAGGCATTACCATATCCTCACCAAGAGGGAGCTTACAAAGgtagtaatttttttattttttttttgctgagttttacaaaggtagtaataccgtagtgctatattgaatgtccgtgttgttttatctttctactaaataaaatcatctgcctgaaatggttttcatatttcctatatttgatactttctatttcacacacattcattgttataaatatttttacag
upper sequence: Vv11s0016g04730.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA05G08220.1 (Glycine max), 5'ss of exon 6
CATTCTGGGAGTTGCCTATGGTTTCCTTGCTGCCACCATGGCCATTCAAAGAATTTGGCAGAGGCATTACCACATACTAACCAAAAGGGAGCTCACGAAGgtaa-gcttccagggcacattcttgttaataactgtggttatttcttgtaa--gaatgataccaatt--ttagaacagttatcatattaatatggttacatgaaa-----------------------
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AATTCTTGGTATAGCTTATGGTTTTCTTGCTGCCACCATGGCCATTCAAAGAATATGGCAGAGGCACTACCATATCCTCACCAAGAGGGAGCTTACAAAGgtaataataccccagtgctatattgaatgtccgtgttgttttatctttctactaaatgaaatcatctgtctgaaatggttttcatatttcctatatttgatcattcattgttataaatatgtttacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352765258|gb|FQ465955.1|FQ465955EST: GAATTTGGCAGAGGCATTACCACATATTAACCAAAAGGGAGCTCACGAAG GAGTACATTGTGGAGGATCTCCGGGGCTGTTATACGCCACCAAAACTGGAT
genomic: GAATTTGGCAGAGGCATTACCACATACTAACCAAAAGGGAGCTCACGAAGgtaagcttcc ... aatgttgcagGAGTACATTGTGGAGGATCTCCGGGGCTGTTATACGCCACCAAAACTGGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATTCTGGGAGTTGCCTATGGTTTCCTTGCTGCCACCATGGCCATTCAAAGAATTTGGCAGAGGCATTACCACATACTAACCAAAAGGGAGCTCACGAAGgtaagcttccagggcacattcttgttaataactgtggttatttcttgtaagaatgataccaattttagaacagttatcatattaatatggttacatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaagaa