1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TTTCTACATCAGCAGATGCACTATATGTAGGTCTTGGAACACACTATGTGCCATCTGGGAACTTGAGTTCACTGAAAGAGGCCCTTCTGACAACCAGCTTgtatgcctcaaacaatctttctatgcatgacaacaactatttttgccctgctgaaactgcattacgcatgaccatatgctttcacttacatacatgattt...
species | Vitis vinifera |
transcript | Vv11s0016g04290.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CCATCTGGGAACTTGAGTTCACTGAAAGAGGCCCTTCTGACAACCAGCTT TTCAGAGGATCCACATCAGGACATCAGAGAGCTGTTGGTGAAATACAGCCAEST: gi|110363815|gb|EC927434.1|EC927434
genomic: CCATCTGGGAACTTGAGTTCACTGAAAGAGGCCCTTCTGACAACCAGCTTgtatgcctca ... gtccatacagTTCAGAGGATCCACATCAGGACATCAGAGAGCTGTTGGTGAAATACAGCCA
EST: CCATCTGGGAACTTGAGTTCACTGAAAGAGGCCCTTCTGACAACCAGCTT TTCAGAGGATCCACATCAGGACATCAGAGAGCTGTTGGTGAAATACAGCCAEST: gi|161717741|gb|FC066584.1|FC066584
genomic: CCATCTGGGAACTTGAGTTCACTGAAAGAGGCCCTTCTGACAACCAGCTTgtatgcctca ... gtccatacagTTCAGAGGATCCACATCAGGACATCAGAGAGCTGTTGGTGAAATACAGCCA
EST: CCATCTGGGAACTTGAGTTCACTGAAAGAGGCCCTTCTGACAACCAGCTT TTCAGAGGATCCACATCAGGACATCAGAGAGCTGTTGGTGAAATACAGCCAEST: gi|110399519|gb|EC966027.1|EC966027
genomic: CCATCTGGGAACTTGAGTTCACTGAAAGAGGCCCTTCTGACAACCAGCTTgtatgcctca ... gtccatacagTTCAGAGGATCCACATCAGGACATCAGAGAGCTGTTGGTGAAATACAGCCA
EST: CCATCTGGGAACTTGAGTTCACTGAAAGAGGCCCTTCTGACAACCAGCTT TTCAGAGGATCCACATCAGGACATCAGAGAGCTGTTGGTGAAATACAGCCA
genomic: CCATCTGGGAACTTGAGTTCACTGAAAGAGGCCCTTCTGACAACCAGCTTgtatgcctca ... gtccatacagTTCAGAGGATCCACATCAGGACATCAGAGAGCTGTTGGTGAAATACAGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCTACATCAGCAGATGCACTATATGTAGGTCTTGGAACACACTATGTGCCATCTGGGAACTTGAGTTCACTGAAAGAGGCCCTTCTGACAACCAGCTTgtatgcctcaaacaatctttctatgcatgacaacaactatttttgccctgctgaaactgcattacgcatgaccatatgctttcacttacatacatgattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacaaca