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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGTAGAGCAGTATCCGGCTGCAACGTCGTTCCCAGGCGTCCTAGTCCTGCAACTGGGCTCCCCGATTCACTTTGCCAACTCCACTTACATCAGAGAACGgtacttgtagacaacaattttttagcactattagctgacaaattaacaaattagtgaccattaatgttaatttcatcgatcgttcctgttgaaatcgatgggagcag

Basic information

species Vitis vinifera
transcript Vv11s0016g04160.t01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|219555116|gb|FG984377.1|FG984377
EST:     CAACTGGGCTCCCCGATTCACTTTGCCAACTCCACTTACATCAGAGAAAG                         GATTTTGAGGTGGATTAACGAGGAAGAGGACGTTTCAAGTCCCAAAGGGAC
genomic: CAACTGGGCTCCCCGATTCACTTTGCCAACTCCACTTACATCAGAGAACGgtacttgtag ... atgggagcagGATTTTGAGGTGGATTAACGAGGAAGAGGACGTTTCAAGTCCCAAAGGGAC
EST: gi|110403543|gb|EC969137.1|EC969137
EST:     CAACTGGGCTCCCCGATTCACTTTGCCAACTCCACTTACATCAGAGAAAG                         GATTTTGAGGTGGATTAACGAGGAAGAGGACGTTTCAAGTCCCAAAGGGAC
genomic: CAACTGGGCTCCCCGATTCACTTTGCCAACTCCACTTACATCAGAGAACGgtacttgtag ... atgggagcagGATTTTGAGGTGGATTAACGAGGAAGAGGACGTTTCAAGTCCCAAAGGGAC
EST: gi|219555059|gb|FG984848.1|FG984848
EST:     CAACTGGGCTCCCCGATTCACTTTGCCAACTCCACTTACATCAGAGAAAG                         GATTTTGAGGTGGATTAACGAGGAAGAGGACGTTTCAAGTCCCAAAGGGAC
genomic: CAACTGGGCTCCCCGATTCACTTTGCCAACTCCACTTACATCAGAGAACGgtacttgtag ... atgggagcagGATTTTGAGGTGGATTAACGAGGAAGAGGACGTTTCAAGTCCCAAAGGGAC
EST: gi|22011353|gb|BQ796387.1|BQ796387
EST:     CAACTGGGCTCCCCGATTCACTTTGCCAACTCCACTTACATCAGAGAAAG                         GATTTTGAGGTGGATTAACGAGGAAGAGGACGTTTCAAGTCCCAAAGGGAC
genomic: CAACTGGGCTCCCCGATTCACTTTGCCAACTCCACTTACATCAGAGAACGgtacttgtag ... atgggagcagGATTTTGAGGTGGATTAACGAGGAAGAGGACGTTTCAAGTCCCAAAGGGAC
EST: gi|219555052|gb|FG984841.1|FG984841
EST:     CAACTGGGCTCCCCGATTCACTTTGCCAACTCCACTTACATCAGAGAAAG                         GATTTTGAGGTGGATTAACGAGGAAGAGGACGTTTCAAGTCCCAAAGGGAC
genomic: CAACTGGGCTCCCCGATTCACTTTGCCAACTCCACTTACATCAGAGAACGgtacttgtag ... atgggagcagGATTTTGAGGTGGATTAACGAGGAAGAGGACGTTTCAAGTCCCAAAGGGAC