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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCGCATTTGTTTTTGGATAGCTACAGTTCCAGCTGGAATACTTGCTTTTGCCATGATGTTCTGTGCAGAGAGTCCACACTGGCTATACAAGgtttgctgtcatatgtgccttttgtaccttgagatgatttattgttttgtccatccaagtgccaggttctgttgctttgaatggttctcttgtgcttccc...

Basic information

species Vitis vinifera
transcript Vv11s0016g03660.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g03660.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA07G09270.3 (Glycine max), 5'ss of exon 8
GTGGCGCATTTGTTTTTGGATAGCTACAGTTCCAGCTGGAATACTTGCTTTTGCCATGATGTTCTGTGCAGAGAGTCCACACTGGCTATACAAGgtttgctgtcatatgtgccttttgtaccttgagatgatttattgttttgtccatccaagtgccaggttctgttgct---ttgaatggttctcttgtgcttccc
||||||  ||||||||||| || ||||  |||||||||  ||||||||    || ||| | ||||| |||||||||||||| ||| |||||||||||       |        || | |    | ||||  | | |  | || ||  | ||  ||  |  | ||||| ||   ||   | |  | | |   | |   
GTGGCGGGTTTGTTTTTGGGTATCTACCATTCCAGCTGCTATACTTGCCACAGCTATGGTCTTCTGCGCAGAGAGTCCACATTGGTTATACAAGgttgatacctagtctaatattatttcatcttagatattatctcttattatcttttcatttgtaacttactgtttctatattagtttgaaccccttgacgt---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161712692|gb|FC062264.1|FC062264
EST:     TTGCTTTTGCCATGATGTTCTGTGCAGAGAGTCCACACTGGCTATACAAG                         AAAGGAAGAATTGCTGAAGCTGAAGCTGAATTTGAGAAGCTTTTAGGAGGA
genomic: TTGCTTTTGCCATGATGTTCTGTGCAGAGAGTCCACACTGGCTATACAAGgtttgctgtc ... ggtgttgtagAAAGGAAGAATTGCTGAAGCTGAAGCTGAATTTGAGAAGCTTTTAGGAGGA