Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAATATGGAGTCTATTATGAGAAATAGGGAACTGACAGAGACGCGGATGATGCAGgtatatcaatttattctttcaagcatgcaacttgtcttaagtggattcttaacctatccttgaacccatattttttctcaaccatgaaattcttagattagtgaggatgtacttatctaatag

Basic information

species Vitis vinifera
transcript Vv11s0016g03230.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g03230.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT2G19950.2 (Arabidopsis thaliana), 5'ss of exon 8
GCAAATATGGAGTCTATTATGAGAAATAGGGAACTGACAGAGACGCGGATGATGCAGgtatatcaatttattctttcaagcatgcaacttgtcttaagtggattcttaacctatccttgaacccatattttttctcaaccatgaaattcttagattagtgaggatgtacttatctaatag--
| | | |||||||||||||||||||| || ||| || | |||||  |||||||||||||||  | ||   || |||||   |||  |||   | |||        || |||   || || |   | | || |   ||   || |  | || |||  | |||     || ||   || ||   
GGAGACATGGAGTCTATTATGAGAAACAGAGAATTGGCTGAGACTAGGATGATGCAGgtattactataatttttttcatcaatg--actaaccataa--------tttaccg--ccgtgtatatacaattataaacag--ataaggtcctcagaccattgaatcaatattttcttattacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77581293|gb|DV219578.1|DV219578
EST:     TGGAGTCTATTATGAGAAATAGGGAACTGACAGAGACGCGGATGATGCAG                         GCTCTGCGGGAGGAGCTGGCTTCTGCAGAACGGAGAGCAGAAGAAGAGCGT
genomic: TGGAGTCTATTATGAGAAATAGGGAACTGACAGAGACGCGGATGATGCAGgtatatcaat ... tatctaatagGCTCTGCGGGAGGAGCTGGCTTCTGCAGAACGGAGAGCAGAAGAAGAGCGT