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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTCCTGACATGTCAGCGATGCATCACGATACATCTCCTGATCTGAGGGTTGTTGGCAGCAAACTAAAAGATATCTTGGATgtatgttactctgaccacattgttgtctgaaaaatgaaaatgtaataatattttctggcctgacagtttactttcaatctcctaaaaaatggaaaacaag...

Basic information

species Vitis vinifera
transcript Vv11s0016g03070.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g03070.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA07G12190.1 (Glycine max), 5'ss of exon 8
GACTCCTGACATGTCAGCGATGCATCACGATACATCTCCTGATCTGAGGGTTGTTGGCAGCAAACTAAAAGATATCTTGGATgtatgttactctgaccacattgttgtctg-aaaaatgaaaatgtaataatattttctggcctgacagtttactttcaatctcctaaaaaatggaaaacaag
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GACACCTGACATGTCTGCAATGCATCATGATACATCTTCAGATCTGAAGGTGGTTGGAAACAAATTGAAGGATATATTAGAGgtatggatgccttctgaccctgttgaatataaatatgcttgtttgttcgcacattcagatcatgttaattgttttccttgaattagata-tagaagtcagg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110687027|gb|EE064076.1|EE064076
EST:     CATCTCCTGATCTGAGGGTTGTTGGCAGCAAACTAAAAGATATCTTGGAT                         ATACCCAATACTTCCCTGAAAACAAGAAAAGTTGTCATTGAGCTGTGTGAT
genomic: CATCTCCTGATCTGAGGGTTGTTGGCAGCAAACTAAAAGATATCTTGGATgtatgttact ... ttcatgtcagATACCCAATACTTCCCTGAAAACAAGAAAAGTTGTCATTGAGCTGTGTGAT
EST: gi|110713107|gb|EE088738.1|EE088738
EST:     CATCTCCTGATCTGAGGGTTGTTGGCAGCAAACTAAAAGATATCTTGGAT                         ATACCCAATACTTCCCTGAAAACAAGAAAAGTTGTCATTGAGCTGTGTGAT
genomic: CATCTCCTGATCTGAGGGTTGTTGGCAGCAAACTAAAAGATATCTTGGATgtatgttact ... ttcatgtcagATACCCAATACTTCCCTGAAAACAAGAAAAGTTGTCATTGAGCTGTGTGAT
EST: gi|110410290|gb|EC975970.1|EC975970
EST:     CATCTCCTGATCTGAGGGTTGTTGGCAGCAAACTAAAAGATATCTTGGAT                         ATACCCAATACTTCCCTGAAAACAAGAAAAGTTGTCATTGAGCTGTGTGAT
genomic: CATCTCCTGATCTGAGGGTTGTTGGCAGCAAACTAAAAGATATCTTGGATgtatgttact ... ttcatgtcagATACCCAATACTTCCCTGAAAACAAGAAAAGTTGTCATTGAGCTGTGTGAT
EST: gi|110377656|gb|EC942735.1|EC942735
EST:     CATCTCCTGATCTGAGGGTCGTTGGCAGCAAACTAAAAGATATCTTGGAT                         ATACCCAATACTTCCCTGAAA
genomic: CATCTCCTGATCTGAGGGTTGTTGGCAGCAAACTAAAAGATATCTTGGATgtatgttact ... ttcatgtcagATACCCAATACTTCCCTGAAA
EST: gi|110377552|gb|EC942625.1|EC942625
EST:     CATCTCCTGATCTGAGGGTCGTTGGCAGCAAACTAAAAGATATCTTGGAT                         ATACCCAATACTTCCCTGAAAACAAGAAAAGTTGTCATTGAGCTGTGTGAT
genomic: CATCTCCTGATCTGAGGGTTGTTGGCAGCAAACTAAAAGATATCTTGGATgtatgttact ... ttcatgtcagATACCCAATACTTCCCTGAAAACAAGAAAAGTTGTCATTGAGCTGTGTGAT
EST: gi|22009929|gb|BQ794963.1|BQ794963
EST:     TGGCAGCAAACTAAAAGATATCTTGGAT                         ATACCCAATACTTCCCTGAAAACAAGAAAAGTTGTCATTGAGCTGTGTGAT
genomic: TGGCAGCAAACTAAAAGATATCTTGGATgtatgttact ... ttcatgtcagATACCCAATACTTCCCTGAAAACAAGAAAAGTTGTCATTGAGCTGTGTGAT
EST: gi|110362192|gb|EC925708.1|EC925708
EST:     CATCTCCTGATCTGAGGGTCGTTGGCAGCAAACTAAAAGATATCTTGGAT                         ATACCCAATACTTCCCTGAAAACAAGAAAAGTTGTCATTGAGCTGTGTGAT
genomic: CATCTCCTGATCTGAGGGTTGTTGGCAGCAAACTAAAAGATATCTTGGATgtatgttact ... ttcatgtcagATACCCAATACTTCCCTGAAAACAAGAAAAGTTGTCATTGAGCTGTGTGAT
EST: gi|110360527|gb|EC923703.1|EC923703
EST:     CATCTCCTGATCTGAGGGTCGTTGGCAGCAAACTAAAAGATATCTTGGAT                         ATACCCAATACTTCCCTGAAAACAAGAAAAGTTGTCATTGAGCTGTGTGAT
genomic: CATCTCCTGATCTGAGGGTTGTTGGCAGCAAACTAAAAGATATCTTGGATgtatgttact ... ttcatgtcagATACCCAATACTTCCCTGAAAACAAGAAAAGTTGTCATTGAGCTGTGTGAT
EST: gi|110723174|gb|EE100188.1|EE100188
EST:     CATCTCCTGATCTGAGGGTTGTTGGCANCANACTAAAAGATATCTTGGAT                         ATACC-AATACTTCCCTGAAAACNNNNNNNGTTGTCAATGAACTGTGTGAT
genomic: CATCTCCTGATCTGAGGGTTGTTGGCAGCAAACTAAAAGATATCTTGGATgtatgttact ... ttcatgtcagATACCCAATACTTCCCTGAAAACAAGAAAAGTTGTCATTGAGCTGTGTGAT
EST: gi|110362857|gb|EC926415.1|EC926415
EST:     CATCTCCTGATCTGAGGGTCGTTGGCAGCAAACTAAAAGATATCTTGGAT                         ATACCCAATACTTCCCTGAAAACAAGAAAAGTTGTCATTGAGCTGTGTGAT
genomic: CATCTCCTGATCTGAGGGTTGTTGGCAGCAAACTAAAAGATATCTTGGATgtatgttact ... ttcatgtcagATACCCAATACTTCCCTGAAAACAAGAAAAGTTGTCATTGAGCTGTGTGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACTCCTGACATGTCAGCGATGCATCACGATACATCTCCTGATCTGAGGGTTGTTGGCAGCAAACTAAAAGATATCTTGGATgtatgttactctgaccacattgttgtctgaaaaatgaaaatgtaataatattttctggcctgacagtttactttcaatctcctaaaaaatggaaaacaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacaa