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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTACAGCTTTTTTAACCTATCAGAGATTCTGGGGCAAGCAGGTTGTCATAAAAAATTTGTTTTTTGGTGATTATGAAGTAATATATGTGAACTATCCAGgtattaattatataataatcccaattttcctgttgtacttttctgctattattggatttattggcattaataataaagctatataaaattattgcatttacag

Basic information

species Vitis vinifera
transcript Vv11s0016g02150.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g02150.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA09G07140.1 (Glycine max), 5'ss of exon 6
ACTACAGCTTTTTTAACCTATCAGAGATTCTGGGGCAAGCAGGTTGTCATAAAAAATTTGTTTTTTGGTGATTATGAAGTAATATATGTGAACTATCCAGgtattaattatataataatcccaattttcctgttgtacttttctgctattattggatttattggcatta-ataataaagctatataaaattattgcatttacag
|||||||| |||||||| | | ||||||| |||   || || ||||| ||||| | ||  |  |||||||||||||| ||  ||||||||| ||||||||||||     ||||||  ||    | | || |||     |||  ||   || ||||  |||      |||  |  |    ||  ||| |                
ACTACAGCCTTTTTAACTTCTGAGAGATTTTGGCATAAACAAGTTGTTATAAAGACTTCTTACTTTGGTGATTATGACGTGTTATATGTGACCTATCCAGgtat-----atataa--attttgaatgtcttgtatccttttcatgacttttttgg--ttagaaattttatgtggttcctcttaatatag---------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161721785|gb|FC070148.1|FC070148
EST:     AAAAAATTCGTTTTTTGGTGATTATGAAGTAATATATGTGAACTATCCAG                         GCCTACCCCCTTCTCCACCTTCAGCGCCTTCAAGCATTACTATGATAGATA
genomic: AAAAAATTTGTTTTTTGGTGATTATGAAGTAATATATGTGAACTATCCAGgtattaatta ... gcatttacagGCCTACCCCCTTCTCCACCTTCAGCGCCTTCAAGCATTACTATGATAGATA