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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCTATCCTCGCAGCACATGCATTCGGAAGGGTTGGGTCTTTCGCCAATTTGTCAAGTTGGCAATATTTACAGGTGTTATGGGATTTATAATAGAACAGgtaagcttcttttcacatacgtttccgagctatttcttttttttcttcagaaaattgatgaaggtattctaacatggtctttttgacattattttgcag

Basic information

species Vitis vinifera
transcript Vv11s0016g01930.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g01930.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA13G16560.1 (Glycine max), 5'ss of exon 8
AAGCTATCCTCGCAGCACATGCATTCGGAAGGGTTGGGTCTTTCGCCAATTTGTCAAGTTGGCAATATTTACAGGTGTTATGGGATTTATAATAGAACAGgtaagc---ttcttttcacatacgtttccgagctatttcttttttttcttcagaaaattgatgaaggtattctaacatggtctttttgacattattttgcag----------------------------------
||||||||||||||   | |  ||||| ||||||||| | ||||||||| |||||||| ||  |||||||||||| ||||||||||||||||||||||| ||||||   | || || | | |   |    |  | |  ||||||||  ||       ||    |   | || |     ||||| ||| ||   ||| | | |                                  
AAGCTATCCTCGCACACCTTATATTCGAAAGGGTTGGCTGTTTCGCCAACTTGTCAAGCTGATAATATTTACAGGAGTTATGGGATTTATAATAGAACAAgtaagcagttcctgttaataaattgtgttcatttctacctttttttcatttctttttttatgtacatttttttcttgaggtctatttcac-caattctactggtattctgacattattttgactgtaattttgcag

upper sequence: Vv11s0016g01930.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA17G06120.1 (Glycine max), 5'ss of exon 8
AAGCTATCCTCGCAGCACATGCATTCGGAAGGGTTGGGTCTTTCGCCAATTTGTCAAGTTGGCAATATTTACAGGTGTTATGGGATTTATAATAGAACAGgtaagc---------------------ttcttttcacatacgtttccgagctatttctttt--------ttttcttcagaa--aattgatgaa-------ggtattctaacatggtctttttgacattattttgcag
||||||||||||||   | |  ||||| ||||||||| | ||||||||| |||||||| ||  |||||||||||| ||||||||||||||||||||||| ||||||                     ||| ||||   |   |||||   || ||| ||||        ||||||||||    | || |  ||       |||||||| ||||  | ||  |   |  ||| |||||
AAGCTATCCTCGCACACCTTATATTCGAAAGGGTTGGTTGTTTCGCCAACTTGTCAAGCTGATAATATTTACAGGAGTTATGGGATTTATAATAGAACAAgtaagcagttcctgttaataaattgtgttcatttctactttttttcctttcttttttttttgtgcatttttttcttcaggtttatttcaccaattctactggtattctgacattattttgattgtaaaattctgcag

upper sequence: Vv11s0016g01930.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA09G07520.1 (Glycine max), 5'ss of exon 8
AAGCTATCCTCGCAGCACATGCATTCGGAAGGGTTGGGTCTTTCGCCAATTTGTCAAGTTGGCAATATTTACAGGTGTTATGGGATTTATAATAGAACAGgtaagc-ttcttttcacatacgtttccgagctatttct--tttttttcttcagaaaattgatgaaggtattctaacatggtct---ttttgacattattttgcag----------
||||||||||||||   | |   |||| ||||||||||| ||||| ||| |||||||| ||  |||||||||||| ||||||||||||||||||||||| ||||||  | |      | |  |||  |    || |||    |||| |     ||  |  ||  | | |||||   ||  |||   || | |||| ||| ||             
AAGCTATCCTCGCACACCTTCAGTTCGAAAGGGTTGGGTGTTTCGTCAACTTGTCAAGCTGATAATATTTACAGGAGTTATGGGATTTATAATAGAACAAgtaagcactatccgttaacaaatttggggttcatctctacccttttcccctttaatttctattcatgaattctgctatattctgatttataacataattctgttcataattgcag