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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTGCAATATTCACCTCTTTTTGTGGAGGTGCTGAAATTGGTGAAGCCATATCAAAAGACGCTCGCATTCCCCTGGTTTCATTCACTGGGAGTTCAAAGgtaccctgcttacatacttgtgcgctattggaattacatctatgtgagatgccaagtttttatctattcaccataatgtatgcggaccttttggtttgtc...

Basic information

species Vitis vinifera
transcript Vv11s0016g00900.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g00900.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA09G08150.2 (Glycine max), 5'ss of exon 7
AGGTGCAATATTCACCTCTTTTTGTGGAGGTGCTGAAATTGGTGAAGCCATATCAAAAGACGCTCGCATTCCCCTGGTTTCATTCACTGGGAGTTCAAAGgtaccctgcttacatacttgtgcgctattggaattacatctatgtgagatgccaagtttttatctattcaccataatgtatgcggaccttttggtttgtc-
 |||||||||||||||||||| |||||||||||||| |||||| | || ||| |||||||| |||||||||||||||||||||| ||||| ||||||||||||   |   |||  | | ||  |  || | ||||  |   | |  | ||    |   |   | || |    |||   |    | |       || |  | 
TGGTGCAATATTCACCTCTTTCTGTGGAGGTGCTGACATTGGTCAGGCAATAGCAAAAGACACTCGCATTCCCCTGGTTTCATTTACTGGAAGTTCAAAGgtatgttatgtactaagtagttggacat-gaaattttaaacaggaaacataattaaactaagtttaatgcatatacactgacggtataaaactgtcttaca

upper sequence: Vv11s0016g00900.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA15G19670.3 (Glycine max), 5'ss of exon 8
AGGTGCAATATTCACCTCTTTTTGTGGAGGTGCTGAAATTGGTGAAGCCATATCAAAAGACGCTCGCATTCCCCTGGTTTCATTCACTGGGAGTTCAAAGgtaccctgcttacatacttgtgcgctattggaattacatctatgtgagatgccaagtttttatctattcaccataatgtatgcggaccttttggtttgtc---
 |||||||||||||||||||| |||||||||||||| |||||| | || ||| |||||||| | |||||||||||||||||||| ||||| ||||||||||||   |   |||  | | ||  |  || |  |||  ||  | |  | |   ||| |  ||   ||      ||||  | |   |   ||      |||    
TGGTGCAATATTCACCTCTTTCTGTGGAGGTGCTGACATTGGTCAGGCAATAGCAAAAGACACCCGCATTCCCCTGGTTTCATTTACTGGAAGTTCAAAGgtatgttatgtactaagtagttggacat-gatattttatacaggaaacaattcaactaattgaataggatgtataa-atttatag-tgttaaaagatgttgat

upper sequence: Vv11s0016g00900.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT1G54100.1 (Arabidopsis thaliana), 5'ss of exon 9
AGGTGCAATATTCACCTCTTTTTGTGGAGGTGCTGAAATTGGTGAAGCCATATCAAAAGACGCTCGCATTCCCCTGGTTTCATTCACTGGGAGTTCAAAGgtaccctgcttac-atacttgtgcgctattggaattacatctatgtgagatgccaagtttttatctattcaccataatgtatgcggaccttttggtttgtc
 ||||| || || ||  |  | ||||| |||||||||||||||||||| ||| | |||||| | ||||||||| | || || || ||||| || || | |||||     | || ||| |    | |      ||  ||| ||  |     ||     |  || |||  ||     |   |||||  |              
CGGTGCCATTTTTACGGCCATGTGTGGTGGTGCTGAAATTGGTGAAGCAATAGCCAAAGACACACGCATTCCCTTAGTATCCTTTACTGGAAGCTCCAGGgtacttccttaactatattccacctcccaaccaaacaca-ctgagcctactggtccatcattgtcttctctttgaatattatgcatag-------------