Sequence
atgc intronic sequence ATGC exonic sequenceCTAGTAGAGAAACAAAGACTGATTGAGTTTGCAGAAGCACTTCGCAGCAAACTCAACTACTTTGACGAGTTGGAGAATgtaaggtttgaatgctatcttgatcagggttttggtttgcttcaaataatatattttctaaatatgttttgttttctagcctgacatttcaatcaaccaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g00350.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os08g34970.1 (Oryza sativa), 5'ss of exon 7
CTAGTAGAGAAACAAAGACTGATTGAGTTTGCAGAAGCACTTCGCAGCAAACTCAACTACTTTGACGAGTTGGAGAATgtaaggtttgaatgctatcttgatcagggttttggtttgcttcaaataatatatttt-ctaaat--atgttttgttttctagcctgacatttcaatcaaccaa--
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TTGTTGGAGAAACAAAGGCTGATTGAGTTTGCAGAAGCACTTCGAAGTAGGTTGAACTACTTTGATGAATTGGAAAATgtaaggtttg---gcatccctagtttgtctattgagca--ttagattaataaatttgattaaattaatgcctctcctacaagttctacatctcacacaagcataa
upper sequence: Vv11s0016g00350.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM5G825854_T02 (Zea mays), 5'ss of exon 7
CTAGTAGAGAAACAAAGACTGATTGAGTTTGCAGAAGCACTTCGCAGCAAACTCAACTACTTTGACGAGTTGGAGAATgtaaggtttgaatgctatcttgatcagggttttggtttgcttcaaataatatattttct-aaatatgttttgttttctagcctgacatttcaatcaaccaa-
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TTGGTTGAGAAACAAAGGCTGATCGAGTTTGCAGAGGCACTTCGAAGCAGGCTCAATTACTTTGATGAATTAGAAAATgtaaggtttggcaaacatagttcgcata-tcacaaaaaatatattatattctacttaatgaaacaaatcatatccagtcaattctcgtt-caatggttctag
upper sequence: Vv11s0016g00350.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA17G04990.1 (Glycine max), 5'ss of exon 7
CTAGTAGAGAAACAAAGACTGATTGAGTTTGCAGAAGCACTTCGCAGCAAACTCAACTACTTTGACGAGTTGGAGAATgtaaggtttgaatgctatcttgatcagggttttggtttgcttcaaataat-atattttctaaatatgttttgttttc-tagcctgacatttcaatcaaccaa
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CTACAAGAGAAACAAAGACTAATTGATTTTGCTGAAGCACTTCGTAGTAAACTCAATTACTTTGATGAACTGGAGAATgtaaggtttgactgctggcttgactggatctttttcttgatttagtttaccatcttttcctctttttttttggtttaatgatctaatagcatgttacatc--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122689568|gb|EC941180.1|EC941180EST: TTGCAGAAGCACTTCGCAGCAAACTCAACTACTTTGACGAGTTGGAGAAT GTTGCTACCAGTTTTTATTCTCCAAACATGAATGTTGGCAATGAGAACTTT
genomic: TTGCAGAAGCACTTCGCAGCAAACTCAACTACTTTGACGAGTTGGAGAATgtaaggtttg ... ctgtttgcagGTTGCTACCAGTTTTTATTCTCCAAACATGAATGTTGGCAATGAGAACTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTAGTAGAGAAACAAAGACTGATTGAGTTTGCAGAAGCACTTCGCAGCAAACTCAACTACTTTGACGAGTTGGAGAATgtaaggtttgaatgctatcttgatcagggttttggtttgcttcaaataatatattttctaaatatgttttgttttctagcctgacatttcaatcaaccaa
- - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaataa