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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGAGACAGAGAAGTTCAACGTACCATGCTTGAAATTGTAAATCAGCTTGATGGTTTTGATGCTCGAGGAAACATCAAAGTTATGATGGCAACAAACAGgttagttggaaaccaatctatagttcttattcactgttgatgtcccacttaattttcaatcctttcttttgccaatgaacttaattgatttgttttttttctttcactatcttaattttgaccttttaaag

Basic information

species Vitis vinifera
transcript Vv11s0016g00230.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g00230.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: PP1S152_13V6.2 (Physcomitrella patens), 5'ss of exon 8
GTGGAGACAGAGAAGTTCAACGTACCATGCTTGAAATTGTAAATCAGCTTGATGGTTTTGATGCTCGAGGAAACATCAAAGTTATGATGGCAACAAACAGgttag-ttggaaaccaatctatagttctt--attcactgttgatgtcccact------taattttcaatcctttcttttgccaatgaacttaattgatttg---ttttttttctttcactatcttaattttgaccttttaaag-----------------------------------------------------
| || || |  || |||||| | || ||||||||||| || ||||| ||||| ||||| |||||||| || || ||||||||  |||||||||| || |||| |  |      |  |  |||   ||||  | | | || || | | |  ||      |   | |     || | | | | |  ||      | | ||  |   | ||| | |   ||  |  | |||  ||   ||  |  |                                                     
GGGGTGATAATGAGGTTCAAAGAACAATGCTTGAAATCGTCAATCAACTTGACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAGgtaaaatccctcgctgacatatttatcttgaagttaatggtgctctgcttctgtggagttggtgtaggatctgtttgtggacgttgcgtcagaattatcagaggtgtttgtacacccatcaaatcaataatgtaattcaagcgattttagacagctcaaacattcgccttgtaaacgaacatgtggttttttacag

upper sequence: Vv11s0016g00230.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: EFJ13722 (Selaginella moellendorffii), 5'ss of exon 8
GTGGAGACAGAGAAGTTCAACGTACCATGCTTGAAATTGTAAATCAGCTTGATGGTTTTGATGCTCGAGGAAACATCAAAGTTATGATGGCAACAAACAGgttagttggaaaccaatctatagttcttattcactgttgatgtcccacttaattttcaatcctttcttttgccaatgaacttaattgatttgttttttttctttcactatcttaattttgaccttttaaag
|||| ||||  ||||| ||| | || ||||| || ||||| |||||||||||||||||||||||||| || ||||| |||||| ||||||| || |||||||      ||   ||   | ||  |||| | ||   |  |   |  || | | |   ||                                                                        
GTGGCGACAACGAAGTGCAAAGGACGATGCTCGAGATTGTCAATCAGCTTGATGGTTTTGATGCTCGTGGGAACATTAAAGTTTTGATGGCCACGAACAGgtactgccgacttca---tctaagtcttttcca--atcaa--acttacattactccaaacag---------------------------------------------------------------------

upper sequence: Vv11s0016g00230.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: EFJ29161 (Selaginella moellendorffii), 5'ss of exon 8
GTGGAGACAGAGAAGTTCAACGTACCATGCTTGAAATTGTAAATCAGCTTGATGGTTTTGATGCTCGAGGAAACATCAAAGTTATGATGGCAACAAACAGgttagttggaaaccaatctatagttcttattcactgttgatgtcccacttaattttcaatcctttcttttgccaatgaacttaattgatttgttttttttctttcactatcttaattttgaccttttaaag
|||| ||||  ||||| ||| | || ||||| || ||||| |||||||| ||||||||||||||||| || ||||| |||||| ||||||| || |||||||      ||   ||   | ||  |||| | ||   |  |   |  || | | |   ||                                                                        
GTGGCGACAACGAAGTGCAAAGGACGATGCTCGAGATTGTCAATCAGCTGGATGGTTTTGATGCTCGTGGGAACATTAAAGTTTTGATGGCCACGAACAGgtactgccgacttca---tctaagtcttttcca--atcaa--acttacattactccaaacag---------------------------------------------------------------------