1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTGTTGGGAGACATATTACTTGATCGTTCAAATTCTGTTGTGATGACAAGATATGTGAGCTCAAGGGATAACTTGAGGATTCTTATGAATCTACTCAGAgtatggtgcttttttactttgcttcatattttgtgtcctaacaaggaaccttcctccctctccttctctttcaatctttttttctcttctactctgtcca...
species | Vitis vinifera |
transcript | Vv10s0405g00020.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GATATGTGAGCTCAAGGGATAACTTGAGGATTCTTATGAATCTACTCAGA GAGTCAAGCAAGAGTATTCAGATTGAAGCTTTTCATGTTTTCAAGEST: gi|30125722|gb|CB911061.1|CB911061
genomic: GATATGTGAGCTCAAGGGATAACTTGAGGATTCTTATGAATCTACTCAGAgtatggtgct ... ttcttttcagGAGTCAAGCAAGAGTATTCAGATTGAAGCTTTTCATGTTTTCAAG
EST: GATATGTGAGCTCAAGGGATAACTTGAGGATTCTTATGAATCTACTCAGA GAGTCAAGCAAGAGTATTCAGATTGAAGCTTTTCATGTTTTCAAGEST: gi|30136804|gb|CB922142.1|CB922142
genomic: GATATGTGAGCTCAAGGGATAACTTGAGGATTCTTATGAATCTACTCAGAgtatggtgct ... ttcttttcagGAGTCAAGCAAGAGTATTCAGATTGAAGCTTTTCATGTTTTCAAG
EST: GATATGTGAGCTCAAGGGATAACTTGAGGATTCTTATGAATCTACTCAGA GAGTCAAGCAAGAGTATTCAGATTGAAGCTTTTCATGTTTTCAAGEST: gi|110397538|gb|EC963286.1|EC963286
genomic: GATATGTGAGCTCAAGGGATAACTTGAGGATTCTTATGAATCTACTCAGAgtatggtgct ... ttcttttcagGAGTCAAGCAAGAGTATTCAGATTGAAGCTTTTCATGTTTTCAAG
EST: GATATGTGAGCTCAAGGGATAACTTGAGGATTCTTATGAATCTACTCAGA GAGTCAAGCAAGAGTATTCAGATTGAAGCTTTTCATGTTTTCAAGEST: gi|110381120|gb|EC946437.1|EC946437
genomic: GATATGTGAGCTCAAGGGATAACTTGAGGATTCTTATGAATCTACTCAGAgtatggtgct ... ttcttttcagGAGTCAAGCAAGAGTATTCAGATTGAAGCTTTTCATGTTTTCAAG
EST: GATATGTGAGCTCAAGGGATAACTTGAGGATTCTTATGAATCTACTCAGA GAGTCAAGCAAGAGTATTCAGATTGAAGCTTTTCATGTTTTCAAGEST: gi|110724431|gb|EE100255.1|EE100255
genomic: GATATGTGAGCTCAAGGGATAACTTGAGGATTCTTATGAATCTACTCAGAgtatggtgct ... ttcttttcagGAGTCAAGCAAGAGTATTCAGATTGAAGCTTTTCATGTTTTCAAG
EST: GATATGTGAGCTCAAGGGATAACTTGAGGATTCTTATGAATCTACTCAGA GAGTCAAGCAAGAGTATTCAGATTGAAGCTTTTCATGTTTTCAAG
genomic: GATATGTGAGCTCAAGGGATAACTTGAGGATTCTTATGAATCTACTCAGAgtatggtgct ... ttcttttcagGAGTCAAGCAAGAGTATTCAGATTGAAGCTTTTCATGTTTTCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGTTGGGAGACATATTACTTGATCGTTCAAATTCTGTTGTGATGACAAGATATGTGAGCTCAAGGGATAACTTGAGGATTCTTATGAATCTACTCAGAgtatggtgcttttttactttgcttcatattttgtgtcctaacaaggaaccttcctccctctccttctctttcaatctttttttctcttctactctgtcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaggaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccttc