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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACACTTGCAATGACTTTGGCTCAATATCGGTTGCAACCTCGGGTGTATATAGGCTGCATGAAGTCGGGTCCTGTCCTTGCTCAGAAgtaagaagattgtcagatttttcaatcatctaagggttgaggaatcaattatatttggcttctaaatattaatttaatgaaacag

Basic information

species Vitis vinifera
transcript Vv10s0116g01710.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g01710.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA07G39070.1 (Glycine max), 5'ss of exon 9
GAACACTTGCAATGACTTTGGCTCAATATCGGTTGCAACCTCGGGTGTATATAGGCTGCATGAAGTCGGGTCCTGTCCTTGCTCAGAAgtaagaagattgtcagatttttcaatcatctaagggttgaggaatcaattatatttggcttctaaatattaatttaatgaaacag
 |||||||| | || || || ||    ||||   | |||||||||||||||| || |||||||| || |||||||||||||||||||||||| || |       |||||   ||  ||| | | |      ||   ||||||     | |||  | | | | |  |   ||||
CAACACTTGGATTGGCTCTGACTATGCATCGTAGGAAACCTCGGGTGTATATTGGGTGCATGAAATCTGGTCCTGTCCTTGCTCAGAAgtaacaaaacc--tgtatttt---attttcttaagtt------atagtttatatccacttgctag-tgtaactgtcttaccacag

upper sequence: Vv10s0116g01710.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA17G01660.1 (Glycine max), 5'ss of exon 8
GAACACTTGCAATGACTTTGGCTCAATATCGGTTGCAACCTCGGGTGTATATAGGCTGCATGAAGTCGGGTCCTGTCCTTGCTCAGAAgtaagaagattgtcagatttttcaatcatctaagggttgaggaatcaattatatttggcttctaaatattaatttaatgaaacag
 |||||||| | ||||| || ||    ||||   | |||||||||||||||| || |||||||| || ||||||||||||||||| ||||||||| |       |||||      || |     |||     | | ||  | |   ||||  | | | | | |  |   ||||
CAACACTTGGATTGACTCTGTCTATGCATCGTAAGAAACCTCGGGTGTATATTGGGTGCATGAAATCTGGTCCTGTCCTTGCTCAAAAgtaagaaaacc--tgtatttt------attt-----ttg-----ttagtttaaatccacttcctagtgtaactgtcttaccacag