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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatcagtactcttaagagtttggttaattgtttttattttaacttctgtcccatcaaatattcttctaggatttattgtactagttgatacactt...

Basic information

species Vitis vinifera
transcript Vv10s0116g01210.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os01g47410.1 (Oryza sativa), 5'ss of exon 8
GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatcagtactcttaagagtttg---gttaattgtttttatttta---acttctgtccc-atcaaatattcttctaggatttattgtactagttgatacactt
| | |||||| |  || ||||||||||| |||||||||||||||||  || |  | ||||| ||||||||  |  | ||||||     |||       || |||   ||    |   |     |||   ||   || |  | || || ||  |   | | ||| ||      
GATTCTGTGCAGCTGGGTGTGCAGCAATAGCAGATTCTGGAACTTCACTGCTTACTGGTCCCACGgtatg-gtgtgaactcttctttttttataaaaaaaatgtccataagcaaggaaaagtggtctggattgcatctgatactggggttcctaacattggtttat------

upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G153977_T01 (Zea mays), 5'ss of exon 2
GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatcagtactcttaagagtttggttaattgtttttattttaacttctgtcccatcaaatattcttctaggatttattgtactagttgatacactt
|||  ||||| || |||||||||||||| ||||||||||||||||| ||| | || || || || ||| || |      |  |     ||   |  |      | ||      ||  |   || ||  |     |  | |     | ||| |  ||  | |  ||
GGTTTTGTGCTGGTGGTTGTGCAGCAATAGCAGATTCTGGAACTTCCTTGCTTGCTGGCCCCACAgtaagttttgagctttgtgttctttatctgcagaacaatgatgggttattgggattcaccattttgcgattgaagcagcttcgtagtttttttttctgtt

upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G001713_T01 (Zea mays), 5'ss of exon 4
GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatcagtactcttaagagtttggttaattgtttttattttaacttctgtcccatcaaatat-tcttctaggatttattgtactagttgatacactt
|||  |||||||| || |||||||| || ||||||||||||||||| ||| | || || || |  ||| || |     ||||      | | |  | |||   ||     |  | ||      |    | | ||||    ||| | ||       |    | || |
GGTTTTGTGCCGGCGGCTGTGCAGCCATCGCAGATTCTGGAACTTCCTTGCTTGCTGGCCCCATAgtaagttttga-gctctgttttttatcggcatttgagattgaagcaggtgcttagtttttttttgtgtctttggtgatattttacgtatataataaaacct

upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G065757_T02 (Zea mays), 5'ss of exon 8
GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatcagtactcttaagagtttggttaattgtttttattttaacttctgtcccatcaaatattcttc--taggatttattgtactagttgatacactt
|||  |||||||| || |||||||| || ||||||||||||||||| ||| | || || || || ||| || |    |    |  |  |||  |      ||   |||  | |  |||     |       |||    |   ||||   |||     ||| ||  ||
GGTTTTGTGCCGGTGGCTGTGCAGCCATCGCAGATTCTGGAACTTCCTTGCTTGCTGGCCCCACAgtaagttttg--agctctgtgttttttatctgcatttgagattgaagcagctgcttagtttttgtgtctatggtgatattttacgtatataatgaaaccttt

upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G035636_T01 (Zea mays), 5'ss of exon 8
GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatcagtactcttaagagtttggttaattgtttttattttaacttctgtcccatcaaatat-tcttctaggatttattgtactagttgatacactt
|||  |||||||| || |||||||| || ||||||||||||||||| ||| | || || || ||  || || |     ||||  |   | | |  | |||   ||     |  | ||      |    | | ||||    ||| | ||       |    | || |
GGTTTTGTGCCGGCGGCTGTGCAGCCATCGCAGATTCTGGAACTTCCTTGCTTGCTGGCCCCACAataagttttga-gctctgtattttatcggcatttgagattgaagcaggtgcttagtttttttttgtgtctttggtgatattttacgtatataataaaacct

upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G370357_T01 (Zea mays), 5'ss of exon 6
GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatcagtactcttaagagtttggttaattgtttttattttaacttctgtcccatcaaatattcttctaggatttattgtac-tagttgatacactt----
|||  |||||||| || |||||||| || ||||||||||||||||| ||| | || || || || ||| || |     ||||      |||  |      ||   |||  | | | ||     |    |  | |  | ||   |||| ||| ||  | ||| |       
GGTTTTGTGCCGGCGGCTGTGCAGCTATGGCAGATTCTGGAACTTCCTTGCTTGCTGGCCCCACAgtaagttttga-gctct----gtttttatcggcatttgagattgaagcatgtgcttagttgttttgtgtctttggtgatattttacgtatataataaaacctttt

upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM5G899123_T01 (Zea mays), 5'ss of exon 3
GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatcagtactcttaagagtttggttaattgtttttattttaacttctgtcccatcaaatattcttctaggatttattgtac-tagttgatacactt----
|||  |||||||| || |||||||| || ||||||||||||||||| ||| | || || || || ||| || |     ||||      |||  |      ||   |||  | | | ||     |    |  | |  | ||   |||| ||| ||  | ||| |       
GGTTTTGTGCCGGCGGCTGTGCAGCCATGGCAGATTCTGGAACTTCCTTGCTTGCTGGCCCCACAgtaagttttga-gctct----gtttttatcggcatttgagattgaagcatgtgcttagtttttttgtgtctttggtgatattttacgtatataataaaacctttt

upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA15G11670.1 (Glycine max), 5'ss of exon 7
GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatcagtactcttaagagt--ttggttaatt---gtttttattttaacttctg--tcccatcaaatattct---tctaggatttattgtactagttgatacactt---------------------------------------------------------------------
| || ||| |    |  ||| ||||||||||||| ||||||||||||||||| || |||||||||||||| || | | ||  |||  ||   | || |||    |    |||||  | ||     ||| || | |  |||    |||   |   ||  |  ||  | ||                                                                           
GATATTGTACTAATGACTGTTCAGCAATTGCAGACTCTGGAACTTCTTTGTTAGCTGGTCCAACGgtatgaataaatgcttgtaaatgtagcttgtaaatgtaggcagctatttagattttcatttccaattagaatttcattgtctgtaaagcatgcttttaactaatgggaaaggggtctaaaaattgtacaaacaaatgcttctgaccatatgatcaaaatacatgattatgtttttgtag

upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA09G00810.1 (Glycine max), 5'ss of exon 7
GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatcagtactcttaagagtttggttaattgtttttattttaacttctgtcccatcaaatattcttctaggatttattgtactagttgatacactt---
| |||||||| |  |  ||  |||||||||| || |||||||||||||| ||||| |||||||||||||| || ||| ||  |||  ||  | |    | |||  ||||| | |||      |  |  |  |  ||    |   ||  || ||  | ||         
GATACTGTGCTGATGACTGCTCAGCAATTGCGGACTCTGGAACTTCTTTATTGGCTGGTCCAACGgtatgaataagtgcttgtaaatgtaggct--gctatttagattttcatttccaatt-agaatttcatgatccgtaaggcatgctattaactaatgggaaaggg

upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA07G39240.2 (Glycine max), 5'ss of exon 8
GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatcagtactcttaagagtttggttaattgtttttattttaacttctgtcc-catcaa-atattcttctaggatttattgtactagttgatacactt
| || ||||| |  || ||| |||| |||||||| || || ||||||||||||||||||||||||||||| || | | ||  ||    |    | | |  | ||||| |    |||  |   |||    ||||| |     || || |      || |  |      
GATATTGTGCTGATGGCTGTTCAGCCATTGCAGACTCAGGGACTTCTTTGTTGGCAGGTCCAACGgtatgaataaatgcttatagatatagactgattaatatttatatagtattcaattaacatggttatattatatgcagacttttcccgtgagatattgtct--

upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA17G01500.1 (Glycine max), 5'ss of exon 8
GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatcagtactcttaagagtttggttaattgtttttattttaacttctgtcccatcaaatattcttctaggatttattgtactagttgatacactt---------------------------------------------------------------------------------
| || |||||    || ||| |||| |||||||| || || ||||||||||||||||||||||||||||| || | |     || ||  | | || |||  | ||  | ||   |    |   |       ||||     ||| ||  | ||  |||      ||                                                                                 
GATATTGTGCTAATGGCTGTTCAGCCATTGCAGACTCAGGGACTTCTTTGTTGGCAGGTCCAACGgtatgaataaatgagtgta-gatatagattgattaatgtttatgtagtattcaacaattatgggggtctttagacattgataattctcattgcgttgtttatattgcatgtgaaaaaagatctaacaaatgcttctaactagcttgtttctatgatcacatatgtggttttgttcttgtag

upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: PP1S99_158V6.1 (Physcomitrella patens), 5'ss of exon 7
GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatcagtact---cttaag--agtttggttaattgtttttattttaacttctgtccc-atcaaatattcttctagg----atttattgtactagttgatac-actt--------------------------------------------------
| | |||||| ||||| ||||| |||||||||||||| ||||||||| |||| || ||||| |||||  ||  | |  |    |  |||  | | |  || || ||    |       | || |||| ||  |||     | | |        || | | |||  |||| | ||||                                                  
GATTCTGTGCTGGAGGATGTGCTGCAATTGCAGATTCCGGAACTTCTCTGTTAGCTGGTCCTACGgttagttcctgcccagagccaaagtaaatgtatttcatggtcgcgacaactggtgctctcccgattgaatgcagatatggatgttgcctactattctaagtgatgccacttgaaaatttgtctctaataagtgcttatgtactgggattgttgtctgatag

upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: EFJ34434 (Selaginella moellendorffii), 5'ss of exon 6
GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatcagtactcttaagagtttggttaattgtttttattttaacttctgtcccatcaaatattcttctaggatttattgtactagttgatacactt
||| ||||||   ||| ||||| |||||||||||||||||||||||  || | || ||||| |||||||||  ||  |  |  |||        |||  ||| || |||| ||                                                    
GGTTCTGTGCTAAAGGATGTGCTGCAATTGCAGATTCTGGAACTTCACTGCTTGCTGGTCCTACGgtatgttaca--agccaaaagcagccatctaacagttgttgttttgacag--------------------------------------------------

upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: EFJ34433 (Selaginella moellendorffii), 5'ss of exon 6
GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatcagtactcttaagagtttggttaattgtttttattttaacttctgtcccatcaaatattcttctaggatttattgtactagttgatacactt
||| ||||||   ||| ||||| |||||||||||||||||||||||  || | |  ||||| |||||||||  ||     |  ||     |  |  |  ||| || |||| ||                                                    
GGTTCTGTGCTAAAGGATGTGCTGCAATTGCAGATTCTGGAACTTCACTGCTTGTTGGTCCTACGgtatgttacaa---gccaaaagcagtcatctacagttgttgttttgacag--------------------------------------------------

upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: EFJ34432 (Selaginella moellendorffii), 5'ss of exon 6
GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatcagtactcttaagagtttggttaattgtttttattttaacttctgtcccatcaaatattcttctaggatttattgtactagttgatacactt
||| ||||||   ||| ||||| |||||||||||||||||||||||  || | |  ||||| |||||||||  ||  |  |  |||   |    | |  ||| || |||| ||                                                    
GGTTCTGTGCTAAAGGATGTGCTGCAATTGCAGATTCTGGAACTTCACTGCTTGTTGGTCCTACGgtatgttaca--agccaaaagcagtcatcttacagttgttgttttgacag--------------------------------------------------

upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: EFJ06917 (Selaginella moellendorffii), 5'ss of exon 6
GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatcagtactcttaagagtttggttaattgtttttattttaacttctgtcccatcaaatattcttctaggatttattgtactagttgatacactt
||| ||||||   ||| ||||| |||||||||||||||||||||||  || | || ||||| |||||||||  ||  |  |  |||   |    |||  ||| || |||| ||                                                    
GGTTCTGTGCTAAAGGATGTGCTGCAATTGCAGATTCTGGAACTTCACTGCTTGCTGGTCCTACGgtatgttaca--agccaaaagcagtcatctaacagttgttgttttgacag--------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77577410|gb|DV217422.1|DV217422
EST:     CTTCTTTGTTGGCAGGTCCAACG                         GCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
genomic: CTTCTTTGTTGGCAGGTCCAACGgtatgtatca ... tctttctcagGCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
EST: gi|352794761|gb|FQ475259.1|FQ475259
EST:     GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG                         GCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
genomic: GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatca ... tctttctcagGCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
EST: gi|30300182|gb|CB976976.1|CB976976
EST:     GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG                         GCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
genomic: GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatca ... tctttctcagGCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
EST: gi|27579600|gb|CB002295.1|CB002295
EST:     GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG                         GCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
genomic: GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatca ... tctttctcagGCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
EST: gi|26266741|gb|CA817804.1|CA817804
EST:     GGAACTTCTTTGTTGGCAGGTCCAACG                         GCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
genomic: GGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatca ... tctttctcagGCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
EST: gi|71881802|gb|DT030857.1|DT030857
EST:     GTTGGCAGGTCCAACG                         GCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
genomic: GTTGGCAGGTCCAACGgtatgtatca ... tctttctcagGCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
EST: gi|30251118|gb|CB968851.1|CB968851
EST:     GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG                         GCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
genomic: GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatca ... tctttctcagGCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
EST: gi|110718432|gb|EE095257.1|EE095257
EST:     GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG                         GCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
genomic: GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatca ... tctttctcagGCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
EST: gi|34549541|gb|CF517773.1|CF517773
EST:     GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG                         GCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
genomic: GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatca ... tctttctcagGCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
EST: gi|33402264|gb|CF207891.1|CF207891
EST:     GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG                         GCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
genomic: GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatca ... tctttctcagGCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
EST: gi|161719906|gb|FC066714.1|FC066714
EST:     GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG                         GCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
genomic: GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatca ... tctttctcagGCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
EST: gi|110701137|gb|EE078403.1|EE078403
EST:     GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG                         GCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
genomic: GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatca ... tctttctcagGCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
EST: gi|110692890|gb|EE068644.1|EE068644
EST:     GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG                         GCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
genomic: GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatca ... tctttctcagGCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
EST: gi|26264648|gb|CA815711.1|CA815711
EST:     GCAGGTCCAACG                         GCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
genomic: GCAGGTCCAACGgtatgtatca ... tctttctcagGCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
EST: gi|71890243|gb|DT039298.1|DT039298
EST:     GTTGGCAGGTCCAACG                         GCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
genomic: GTTGGCAGGTCCAACGgtatgtatca ... tctttctcagGCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
EST: gi|34550114|gb|CF518332.1|CF518332
EST:     GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG                         GCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
genomic: GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatca ... tctttctcagGCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
EST: gi|110724332|gb|EE100065.1|EE100065
EST:     GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG                         GCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
genomic: GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatca ... tctttctcagGCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
EST: gi|27583889|gb|CB006584.1|CB006584
EST:     GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG                         GCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
genomic: GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatca ... tctttctcagGCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
EST: gi|34542385|gb|CF510617.1|CF510617
EST:     GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG                         GCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
genomic: GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatca ... tctttctcagGCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
EST: gi|110387693|gb|EC952381.1|EC952381
EST:     GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG                         GCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
genomic: GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatca ... tctttctcagGCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
EST: gi|46918171|gb|CN547500.1|CN547500
EST:     GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG                         GCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
genomic: GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatca ... tctttctcagGCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
EST: gi|71889630|gb|DT038685.1|DT038685
EST:     GTTGGCAGGTCCAACG                         GCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
genomic: GTTGGCAGGTCCAACGgtatgtatca ... tctttctcagGCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
EST: gi|110724931|gb|EE101189.1|EE101189
EST:     GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG                         GCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
genomic: GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatca ... tctttctcagGCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
EST: gi|26265277|gb|CA816340.1|CA816340
EST:     GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG                         GCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
genomic: GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatca ... tctttctcagGCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
EST: gi|110716609|gb|EE091739.1|EE091739
EST:     GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG                         GCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
genomic: GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatca ... tctttctcagGCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
EST: gi|30253215|gb|CB970766.1|CB970766
EST:     GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG                         GCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
genomic: GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatca ... tctttctcagGCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
EST: gi|110723066|gb|EE099952.1|EE099952
EST:     GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG                         GCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
genomic: GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatca ... tctttctcagGCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
EST: gi|34549014|gb|CF517246.1|CF517246
EST:     GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG                         GCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
genomic: GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatca ... tctttctcagGCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
EST: gi|87584007|gb|DY473330.1|DY473330
EST:     CTTTGTTGGCAGGTCCAACG                         GCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
genomic: CTTTGTTGGCAGGTCCAACGgtatgtatca ... tctttctcagGCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
EST: gi|27585499|gb|CB008194.1|CB008194
EST:     GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG                         GCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
genomic: GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatca ... tctttctcagGCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
EST: gi|71884619|gb|DT033674.1|DT033674
EST:     GTTGGCAGGTCCAACG                         GCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
genomic: GTTGGCAGGTCCAACGgtatgtatca ... tctttctcagGCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
EST: gi|71865136|gb|DT014191.1|DT014191
EST:     GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG                         GCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAG
genomic: GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatca ... tctttctcagGCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAG
EST: gi|77589411|gb|DV223973.1|DV223973
EST:     GTTGGCAGGTCCAACG                         GCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
genomic: GTTGGCAGGTCCAACGgtatgtatca ... tctttctcagGCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
EST: gi|30300771|gb|CB977565.1|CB977565
EST:     GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG                         GCTGTTGTTGCTATGATAAACCATGCCATTGGAGCCACCGGAGTTGTTAGC
genomic: GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatca ... tctttctcagGCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
EST: gi|110684973|gb|EE062864.1|EE062864
EST:     GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG                         GCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC
genomic: GTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatca ... tctttctcagGCTGTTGTTGCTATGATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatcagtactcttaagagtttggttaattgtttttattttaacttctgtcccatcaaatattcttctaggatttattgtactagttgatacactt

- - - - - - - - - - - - - -  GCAGAT