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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACTTCAGAAGCAGCACAACTGTATCCCTGATGAACACTATGTGCAGACATTACTTGCAgtaagcattgggttcatgtttgcttttttatttgttctccaccgatgattatttatgacttatgagctccctcttctcactaagattatggtgtcgttttttattccaaaactagcaaaactaagagattgtttattatcatattacgtttttttttaattctttactctgtgttttcctcttag

Basic information

species Vitis vinifera
transcript Vv10s0116g00980.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g00980.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os01g50040.1 (Oryza sativa), 5'ss of exon 9
----AAACT--TCAGAAGCAGCACAACTGTATCCCTGATGAACACTATGTGCAGACATTACTTGCAgtaagcattgggttcatgtttgcttttttatttgttctccaccgatgattatttatgacttatgagctccctcttctcactaagattatggtgtcgttttttattccaaaactagcaaaactaagagattgtttattatcatattacgtttttttttaattctttactctgtgttttcctcttag
     | ||  ||  | | ||||  | || || || |||||||||||||||||||||||| || |||||||  |||  ||  ||||    | || |||||    |  | |   || ||      | ||||       ||||| ||  ||  | ||  |||      || ||  ||   | | |                                                                    
AAAGGATCTACTCGAATGGAGCATGATTGCATTCCAGATGAACACTATGTGCAGACATTATTTTCAgtaaggcttg--ttattgttga--tattgatttgcagactgcaggacataat------cgtatg------ttcttcacaacaat-tcataatgtttcccattcttttaacttt-gtag-------------------------------------------------------------------

upper sequence: Vv10s0116g00980.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT1G62305.2 (Arabidopsis thaliana), 5'ss of exon 7
AAACTTCAGAAGCAGCACAACTGTATCCCTGATGAACACTATGTGCAGACATTACTTGCAgtaagcattgg-gttcatgtttgcttttttatttgttc-tccaccgatgattatttatgacttatgagctccctcttctcactaagattatggtgtcgttttttattccaaaactagcaaaactaagagattgtttattatcatattacgtttttttttaattctttactctgtgttttcctcttag
|||    ||| ||  |||||||||||||||||||||||||| ||||| ||  ||||  |||||||||       | ||       |     |  |||| || |    | |     |     ||  |   || || ||  ||     ||  || ||   | ||                                                                                     
AAAA---AGAGGCGACACAACTGTATCCCTGATGAACACTACGTGCAAACTCTACTAACAgtaagcacaaacagttatcaaaatctcccattcagttcatctatttctaaccccctg-atttttcggattcactttttgcatcccaatcttgatggtctcttcag----------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110393038|gb|EC957857.1|EC957857
EST:     AGCAGCACAACTGTATCCCTGATGAACACTATGTGCAGACATTACTTGCA                         ATGAGTGAGCTGGAAAGTGAACTTGAACGAAGAACATTGACCTACACCGAA
genomic: AGCAGCACAACTGTATCCCTGATGAACACTATGTGCAGACATTACTTGCAgtaagcattg ... ttcctcttagATGAGTGAGCTGGAAAGTGAACTTGAACGAAGAACATTGACCTACACTGAA
EST: gi|110400177|gb|EC966725.1|EC966725
EST:     AGCAGCACAACTGTATCCCTGATGAACACTATGTGCAGACATTACTTGCA                         ATGAGTGAGCTGGAAAGTGAACTTGAACGAAGAACATTGACCTACACCGAA
genomic: AGCAGCACAACTGTATCCCTGATGAACACTATGTGCAGACATTACTTGCAgtaagcattg ... ttcctcttagATGAGTGAGCTGGAAAGTGAACTTGAACGAAGAACATTGACCTACACTGAA