Sequence
atgc intronic sequence ATGC exonic sequenceCTTGATGATGCTGACATAATGAAACCCAACTTGGTAGCTCCTGGGAATTTTATATGGGCTGCTTGGAGTTCCCTTGGCACAGATTCTGTTGAATTCCTAGgtatacacaaactaaaaagtgcaatgtgggtggcacacctttccatgtgatctaccactacattcaaaacatggattggctaattaacttatgaattatttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0092g00170.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA05G30460.1 (Glycine max), 5'ss of exon 9
CTTGATGATGCTGACATAATGAAACCCAACTTGGTAGCTCCTGGGAATTTTATATGGGCTGCTTGGAGTTCCCTTGGCACAGATTCTGTTGAATTCCTAGgt------atacacaa----------actaaaaagtgcaatgtgggtgg--cacacctttccatgtgatctaccactacattcaaaacatggattggctaattaacttatgaattatttcag--------------------------------------------------------------------------
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CCTCATGAAGCTGACATTATGAAACCCAATTTGGTAGCTCCTGGAAATTTTATATGGGCTGCTTGGAGTTCTGTTGCCACTGATTCTGTTGAATTTCTAGgtttgtcaatacataagcttgtttttactagaaaacaaaacataaacaagtttaaggtgtttatttggcctgtt-ccaagttaaacataacatccttttaagttataaat-atttatactaggaaataggaattttgatttattaagcatgtcaatatagtgatatgtgaatatctgatctacactattctaacag
upper sequence: Vv10s0092g00170.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA08G13590.1 (Glycine max), 5'ss of exon 9
CTTGATGATGCTGACATAATGAAACCCAACTTGGTAGCTCCTGGGAATTTTATATGGGCTGCTTGGAGTTCCCTTGGCACAGATTCTGTTGAATTCCTAGgtatacacaaac-taaaaagtgcaatgt----------gggtggcacacctt--------tccatgtgatctaccactacattcaaa---acatggattggctaattaacttatgaattatttcag------------------------------------------------------------------
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CCTCATGAAGCTGACATTATGAAACCCAATTTGGTAGCTCCTGGAAATTTTATATGGGCTGCTTGGAGTTCTGTTGCCACTGATTCTGTTGAATTTCTAGgtttgccaatacataaggagtttttttttttttttactagaaaacaaaacataaacaagtttaaggtgtttatttggtctgttcaaagttaaacataacatctttttaaattataatatatactaggaaattggagtatatttgatttattaagcatgtcaatatagtgatatgtgaatatcgttctaacag
upper sequence: Vv10s0092g00170.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA15G21920.1 (Glycine max), 5'ss of exon 8
CTTGATGATGCTGACATAATGAAACCCAACTTGGTAGCTCCTGGGAATTTTATATGGGCTGCTTGGAGTTCCCTTGGCACAGATTCTGTTGAATTCCTAGgtataca--------caaactaaaaagtgcaatgtgggt-----ggcacacctttccatgtgatctaccactacattcaaaacatggattggctaattaacttatgaattatttcag-----------------------------------------
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CCTCATGAAGCTGACATTTTGAAACCTAACTTGTTAGCTCCTGGAAATTTTATATGGGCTGCTTGGAGTTCTGTTGGCACTGAATCAGTTGAATTCCTAGgtttgtaaatacgtttatactaggaaaccaaacataaaatttcagtcaagtttaatgagttgttttgataccaatcatatattaaaaaacaacttttcaagtaataaactatgcatgttgataatgtcacataattatcttatctgcattgtcaacag
upper sequence: Vv10s0092g00170.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA09G09850.1 (Glycine max), 5'ss of exon 9
CTTGATGATGCTGACATAATGAAACCCAACTTGGTAGCTCCTGGGAATTTTATATGGGCTGCTTGGAGTTCCCTTGGCACAGATTCTGTTGAATTCCTAGgtatacacaaactaaaaagtgcaatgtgggtggcacacc------tttccat--------gtgatctaccactacattcaaaacatg----gattggctaattaacttatgaattatttcag--------------------------------------------------
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CCTCACGAAGCTGACATTTTGAAACCTAACCTGTTAGCTCCGGGAAATTTTATATGGGCTGCTTGGAGTTCTGTTGGCACTGATTCAGTTGAATTCCTAGgtttgtaaatacataaaagtttatactaggaaaccaaacataaaatttttgtcaagtttaatgacttgttttgataccaatcatatgttaaaaacaactatataagtaataaactatgctatttttttttcaatgcatgctgataatgtcacataatctgcattgccaacag
upper sequence: Vv10s0092g00170.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT1G30600.1 (Arabidopsis thaliana), 5'ss of exon 8
CTTGATGATGCTGACATAATGAAACCCAACTTGGTAGCTCCTGGGAATTTTATATGGGCTGCTTGGAGTTCCCTTGGCACAGATTCTGTTGAATTCCTAGgtatacacaaactaaaaagtgcaatgtgggtggcacacctttccatgtgatctaccactacattcaaaa-catggattggc--taattaacttatgaattatttcag
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TTCGTTGATGCTGATATAATGAAACCCAACTTAGTAGCTCCCGGAAACGCGATATGGGGAGCTTGGAGTCCTCTTGGCATTGGTACAAATGATTTTCAAGgtacacataccctcatttctctttatcagattactca---ttatgtgtt-tctagtagtctttttgagatcttgaattggcgatatttag-----------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33404296|gb|CF209923.1|CF209923EST: TATATGGGCTGCTTGGAGTTCCCTTGGCACAGATTCTGTTGAATTCCTAG GAGAGAACTTTGCAATGATGTCTGGGACAAGCATGACTGCTCCTCATGTTT
genomic: TATATGGGCTGCTTGGAGTTCCCTTGGCACAGATTCTGTTGAATTCCTAGgtatacacaa ... attatttcagGAGAGAACTTTGCAATGATGTCTGGGACAAGCATGGCTGCTCCTCATGTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTGATGATGCTGACATAATGAAACCCAACTTGGTAGCTCCTGGGAATTTTATATGGGCTGCTTGGAGTTCCCTTGGCACAGATTCTGTTGAATTCCTAGgtatacacaaactaaaaagtgcaatgtgggtggcacacctttccatgtgatctaccactacattcaaaacatggattggctaattaacttatgaattatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG