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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTGAGGAGCTTCAAGTTTTGGATATCAAGTTTCTTTATGGATGTTCAAAACCAACTATTGTTGTTCTCTACCAGgtccccaatttggcttcacatttttatgtccattcactcattgttactatttcaaattggttagcaaccacttgttagcatatgttatgttgccattatc...

Basic information

species Vitis vinifera
transcript Vv10s0003g04360.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g04360.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os05g51480.1 (Oryza sativa), 5'ss of exon 8
GCTTGAGGAGCTTCAAGTTTTGGATATCAAGTTTCTTTATGGATGTTCAAAACCAACTATTGTTGTTCTCTACCAGgtccccaatttggcttcacatttttatgtccattcactcattgtta-ctatttcaaattggttagcaaccacttgttagcatatgttatgttgccattatc--
|||||| || |||||||| ||||| |||||||| || ||||| |||   ||||| ||||| ||||| |||||||||||   |  |    ||||||  | || | |  |  |    ||||    ||   || ||| || |||     |  |   | ||  ||  ||| |||| ||     
GCTTGAAGAACTTCAAGTATTGGACATCAAGTTCCTGTATGGCTGTGTTAAACCTACTATAGTTGTCCTCTACCAGgtttgc--tcaaacttcactatattttttgtaccctgcaattgaagtctgaatccaatgggatagttttgaactac-aacaattgccatggtgccttttcttt

upper sequence: Vv10s0003g04360.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G402002_T01 (Zea mays), 5'ss of exon 8
GCTTGAGGAGCTTCAAGTTTTGGATATCAAGTTTCTTTATGGATGTTCAAAACCAACTATTGTTGTTCTCTACCAGgtccccaatttggcttcacatttttatgtccattcactcattgttactatttcaaattggttagcaaccacttgttagcatatgttat-gttgccattatc---------------------------------
 ||||| || ||||||||  |||| ||||| |||||  |||| ||| | ||||| ||||||||||| |||||||||||       |||  | ||| | || ||| ||   |  |   |   |   |||  ||    | | |  |   ||||||  |  ||| || ||||   || |                                  
ACTTGAAGAACTTCAAGTACTGGACATCAAATTTCTACATGGTTGTGCTAAACCTACTATTGTTGTCCTCTACCAGgt-------ttgtttacacttcttgatgacctcacctttgctagaagagttttgaacaattgaactgcattttgttatgacttgtgatagttgtttttgtttatatgatttgcatcttatgctctacacttcag

upper sequence: Vv10s0003g04360.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA05G30530.1 (Glycine max), 5'ss of exon 8
GCTTGAGGAGCTTCAAGTTTTGGATATCAAGTTTCTTTATGGATGTTCAAAACCAACTATTGTTGTTCTCTACCAGgtccccaatttggcttcacatttttatgtccattcactcattgttactatttcaaattggttagcaaccacttgttagcatatgttatgttgccattatc-
|||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||| ||||||||  | |||||   |  || | ||    ||   |    | |  || || | |     |  ||          | |  |   ||| ||  | ||  |||   
GCTTGAGGAGCTCCAAGTTTTGGATATCAAATTTCTTTATGGTTGTTCAAAGCCAACTATTGTGGTTCTTTACCAGgtttctaattttattctacctattgtcatcttgttttgcttcttttctttcttctgctcttttattttagtctttgggtccatgctaaat-gcatttagaa

upper sequence: Vv10s0003g04360.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA08G13680.1 (Glycine max), 5'ss of exon 8
GCTTGAGGAGCTTCAAGTTTTGGATATCAAGTTTCTTTATGGATGTTCAAAACCAACTATTGTTGTTCTCTACCAGgtccccaatttggcttcacatttttatgtccattcactcattgttactatttcaaattggttagcaaccacttgttagcatatgttatgttgccattatc-----
|||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||| ||||||||  | |||||   |  || | ||  | |    | | |  |||  | || ||||  |||  ||| |   | |||||| | | | ||   |   |  |        
GCTTGAGGAGCTCCAAGTTTTGGATATCAAATTTCTTTATGGTTGTTCAAAGCCAACTATTGTGGTTCTTTACCAGgtttctaattttattctacctattgtttttgggttattagttg--attagttca--ttgaatag-actgagttgttatcttgttttgcttcttctctcctctgct

upper sequence: Vv10s0003g04360.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: PP1S458_4V6.1 (Physcomitrella patens), 5'ss of exon 8
---------------GCTTGAGGAGCTTCAAGTTTTGGATATCAAGTTTCTTTATGGATGTTCAAAACCAACTATTGTTGTTCTCTACCAGgtccccaatt-tggcttcacatttttatgtccattcactcattgttactatttcaaattggttagca-accacttgtt------agcatatgttatgttgccattatc----------------------------------------------
               | | || ||||| ||||||||||| ||||||||||||||||| ||| | ||||| |||||||  |||||||| |||||      || |  | |    |||| |  |    |   ||||   |  ||  ||  |  | |   || ||  |||  |      | ||||  |  ||  |  |  ||                                               
GTCTACGTCGCGCAGGTTGGAAGAGCTGCAAGTTTTGGACATCAAGTTTCTTTATGGCTGTGCTAAACCTACTATTGCAGTTCTCTATCAGgttgatccttgtcacctatttttttcaaattttgtgggtcatgcgttgtacatctgacagatctacatactgcttccttttttaaacataattcttgaagggaaaatttcgactttggtagcactgatggtggttttctgatgtgaccaatcag