Sequence
atgc intronic sequence ATGC exonic sequenceGGTGCTTTAGATGATGTTGTGATGGGAGGAGTTAGTGAGAGTACATTTCAAGTAGACCCCACTGGTGGCGAAAATGGTGGGCCTACTGGGGTTTTCAAAGgtttgttcttgttgaatttttcaatctctgtatatgtattattattctaagaataagaaaaccgatacttcttgtgaaactatggtggttttgttttctagacttgaatgtgtttatttatttatttgttttctgggtctacttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g01640.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os02g13970.2 (Oryza sativa), 5'ss of exon 8
GGTGCTTTAGATGATGTTGTGATGGGAGGAGTTAGTGAGAGTACATTTCAAGTAGACCCCACTGGTGGCGAAAATGGTGGGCCTACTGGGGTTTTCAAAGg---tttgttcttgttgaat--ttttcaatctctgtatatgtattattattctaagaataagaaaaccgatacttcttgtgaaactatggtggttttgttttctagacttgaatgtgtttatttatttatttgttttctgggtctacttcag
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GGAGCACTTGATGATGTTGTGATGGGAGGTGTTAGTGAAAGCACATTCCAAATCCAACCAACAGGAAGTGAAACTGATGGACCAACCGGATTGTTCAAAGgtattttgtttttttttaatgatccctcgactccttgtatatgcgatgtggcaattctttggaaaacctctagtctaagcaggtctgtgcaa----tgtattctag----------------------------------------------
upper sequence: Vv10s0003g01640.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA05G29330.1 (Glycine max), 5'ss of exon 8
GGTGCTTTAGATGATGTTGTGATGGGAGGAGTTAGTGAGAGTACATTTCAAGTAGACCCCACTGGTGGCGAAAATGGTGGGCCTACTGGGGTTTTCAAAGgtttgttcttgttgaatttttcaatctctgtatatgtattattattctaagaataagaaaaccgatacttcttg-tgaaactatggtggttttgttttctagacttgaatgtgtttatttatttatttgttttctgggtctacttcag
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GGTGCTTTAGATGATGTGGTGATGGGTGGAGTTAGTGAAAGTACATTTCAAATTGACCCAAGTGGGGGTGAAAATGGTGGACCAACTGGGATTTTTAAAGgtatgt----gtcaaattcttgcaaat--gcatgtgactgcactttggggtaatttgtaacctgtgttttaatgcttgaaataatacaaatgtgtgt-ctagttcag-----------------------------------------
upper sequence: Vv10s0003g01640.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA08G12480.1 (Glycine max), 5'ss of exon 8
GGTGCTTTAGATGATGTTGTGATGGGAGGAGTTAGTGAGAGTACATTTCAAGTAGACCCCACTGGTGGCGAAAATGGTGGGCCTACTGGGGTTTTCAAAGgtttgttcttgttgaatttttcaatctctgtatatgtattattattctaagaataagaaaaccgatactt--cttgtgaaactatggtggttttgttttctagacttgaatgtgtttatttatttatttgttttctgggtctacttcag
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GGTGCTTTAGATGACGTGGTAATGGGTGGAGTTAGTGAAAGCACATTTCAAATTGACCCAAGTGGGGGTGAAAATGGTGGACCAACTGGGGTTTTTAAAGgtatgt----gtcaaattcttgcaaat--gcatgtg-actgcactttgaggtaatttgtaccctgtgttttactgctggaaataatacaaatgcatgt-ctagttcag-----------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|27584507|gb|CB007202.1|CB007202EST: GTAGACCCCACTGGTGGCGAAAATGGTGGGCCTACTGGGGTTTTNCAA-G GTGTTGTTTCCACTGCNCA-CAATGGTGGGTTTACTAGTAT
genomic: GTAGACCCCACTGGTGGCGAAAATGGTGGGCCTACTGGGGTTTT-CAAAGgtttgttctt ... tctacttcagGTGTTGTTTCCACTGC-CAACAATGGTGGGTTTACTAGTAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTGCTTTAGATGATGTTGTGATGGGAGGAGTTAGTGAGAGTACATTTCAAGTAGACCCCACTGGTGGCGAAAATGGTGGGCCTACTGGGGTTTTCAAAGgtttgttcttgttgaatttttcaatctctgtatatgtattattattctaagaataagaaaaccgatacttcttgtgaaactatggtggttttgttttctagacttgaatgtgtttatttatttatttgttttctgggtctacttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG