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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGTTGAAGAAGCAGAGTGCCGAAGAGCTTATGATTCAGCAACTGAAATTTATATGTCTGCTTTTGACCGAACAAAGCCTCCTGAGGAAgtaagtatttcttatgtcctaattttccagatatttctgttatcttctaattctactggttgtag

Basic information

species Vitis vinifera
transcript Vv10s0003g00370.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g00370.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA13G30780.1 (Glycine max), 5'ss of exon 8
AGTGTTGAAGAAGCAGAGTGCCGAAGAGCTTATGATTCAGCAACTGAAATTTATATGTCTGCTTTTGACCGAACAAAGCCTCCTGAGGAAgtaagtatttc---------ttatgtcctaattttccagatattt--ctgttatcttctaattctactggttgtag
|||||||||||||| ||||| || | |||||||||||| ||  | || |||||||||||  |||||||| | || |||||||||||||| || |||  |||         ||   |  | ||| |  |  |||||  || |  | ||||||||  | || ||||||
AGTGTTGAAGAAGCTGAGTGTCGTAAAGCTTATGATTCTGCTGCCGAGATTTATATGTCCTCTTTTGACTGTACTAAGCCTCCTGAGGAGgttagttattcaaattgaaattgaatggtgattatatatttattttcctttccttttctaattacaatgcttgtag

upper sequence: Vv10s0003g00370.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA13G24260.1 (Glycine max), 5'ss of exon 8
AGTGTTGAAGAAGCAGAGTGCCGAAGAGCTTATGATTCAGCAACTGAAATTTATATGTCTGCTTTTGACCGAACAAAGCCTCCTGAGGAAgtaagtatt---tcttatgtcct-------aattttccagatatttctgttatcttctaattctactggttgtag
||||| |||||||| ||||| |   | || |||||||| || |||||  ||||||||||| ||||||||||  ||| ||| ||||||||||| |||| |   |  ||| | ||       |||| |    ||| |||| ||   |||| |||    || ||| ||
AGTGTCGAAGAAGCTGAGTGTCACCGGGCATATGATTCTGCTACTGATGTTTATATGTCTTCTTTTGACCGCTCAACGCCACCTGAGGAAgtgagtaatctattctatctgcttgaagtaaattatgattataattcttttcctttctgattgctatgcttgcag