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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAATTCTTCAGAAGTCTTGCGTGGACTCTTTGTTCCACAACTCAAAGGAAATGGTGCTACTGGTCTTGCAATTTCCCTCCTTGGTGCTATGGTTATGCCgtaagtttcttatgtccatgagaagtgcttatttttccatgcatttttcaaaaaaatattctcttctttgttgactctcatgcacttgctgcag

Basic information

species Vitis vinifera
transcript Vv09s0070g00210.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0070g00210.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os06g46310.3 (Oryza sativa), 5'ss of exon 8
CCAATTCTTCAGAAGTCTTGCGTGGACTCTTTGTTCCACAACTCAAAGGAAATGGTGCTACTGGTCTTGCAATTTCCCTCCTTGGTGCTATGGTTATGCCgtaagtttcttatgtccatgagaagtgcttatttttccatgcatttttcaaaaaaatattctcttctttgttgactctcatgcacttgctgcag
| ||||||||||||||  || | || || ||||||||  |||| ||||| ||||| || || |||||||| || || || |||||||||||||| ||||||| || ||| | |   |       || |  |   |  | |  | |||  | ||||| ||| ||   | | ||     |  | ||          
CAAATTCTTCAGAAGTTGTGAGGGGCCTTTTTGTTCCTGAACTTAAAGGGAATGGAGCCACAGGTCTTGCTATCTCACTACTTGGTGCTATGGTGATGCCgtgagcttcctgtccaccccttttgtcccaaacatatctttaactttcgacaaaaacattttcca-tgtattattcttattacag---------

upper sequence: Vv09s0070g00210.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G069198_T04 (Zea mays), 5'ss of exon 8
CCAATTCTTCAGAAGTCTTGCGTGGACTCTTTGTTCCACAACTCAAAGGAAATGGTGCTACTGGTCTTGCAATTTCCCTCCTTGGTGCTATGGTTATGCCgtaagtttcttatgtccatgagaagtgcttatttttccatgcattt--ttcaaaaaaatattctcttctttgttgactctcatgcacttgctgcag
| ||| || |||||||  |  | || || ||||||||  |||| ||||||||||| ||||| || ||||| || ||  | |||||||||||||| |||||||||| ||||| | || ||         || | || ||| ||||||  || | || |  |  |  || |   || | |||  | ||     |||||
CAAATGCTCCAGAAGTTGTTAGGGGCCTTTTTGTTCCTGAACTTAAAGGAAATGGAGCTACAGGCCTTGCTATCTCATTACTTGGTGCTATGGTGATGCCgtaagcttctttt-tctatc-------tttctgttcccaagcatttggtttagaacataagacctttttccattta-tctgttacataaattgcag

upper sequence: Vv09s0070g00210.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA13G44710.1 (Glycine max), 5'ss of exon 6
CCAATTCTTCAGAAGTCTTGCGTGGACTCTTTGTTCCACAACTCAAAGGAAATGGTGCTACTGGTCTTGCAATTTCCCTCCTTGGTGCTATGGTTATGCCgtaagtttcttatgtccatgagaagtgcttatttttccatgcatttttcaaaaaaatattctc-ttctttgttgactctcatgcacttgctgcag
|  || ||  ||||||  ||   || || ||||  ||| |||| ||||| | |||||||||||||||||||||||| || ||||| ||||||||||||||||  |||  | |||||      |     ||| ||||   ||  || ||  ||||  |||| || | |  || |     | ||| | ||||  |||
CTGATGCTAAAGAAGTTCTGAAGGGTCTTTTTGAGCCAGAACTAAAAGGGAGTGGTGCTACTGGTCTTGCAATTTCTCTTCTTGGAGCTATGGTTATGCCgtgggttcttcatgtcttcttcagccatttaatttt---tgttttcttttaaaatttattttcatgccatgct--tctttatggatttgcctcag

upper sequence: Vv09s0070g00210.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA15G00590.1 (Glycine max), 5'ss of exon 7
CCAATTCTTCAGAAGTCTTGCGTGGACTCTTTGTTCCACAACTCAAAGGAAATGGTGCTACTGGTCTTGCAATTTCCCTCCTTGGTGCTATGGTTATGCCgtaagtttcttatgtccatgagaagtgcttatttttccatgcatttttcaaaaaaatattctcttctttgttgactctcatgcacttgctgcag
|  || ||  ||||||  ||   || || ||||| |||  ||| ||||| | |||||||||||||||||||||||| || ||||| ||||||||||||||||  |||  | |||||      |     ||| ||||   ||  || ||  ||||  |||| || |         |||| ||| | ||||  |||
CTGATGCTAAAGAAGTTCTGAAGGGTCTTTTTGTGCCAGGACTAAAAGGGAGTGGTGCTACTGGTCTTGCAATTTCTCTTCTTGGAGCTATGGTTATGCCgtgggttcttcatgtcttcttcagccatttaatttt---tgttttcttttaaaatgtattttcatgccatgcttctct-atggatttgcctcag

upper sequence: Vv09s0070g00210.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA08G23320.1 (Glycine max), 5'ss of exon 8
CCAATTCTTCAGAAGTCTTGCGTGGACTCTTTGTTCCACAACTCAAAGGAAATGGTGCTACTGGTCTTGCAATTTCCCTCCTTGGTGCTATGGTTATGCCgtaagtttcttatgtccatgagaagtgcttatttttccatgcatttttcaaaaaaatattctctt-ctttgttgactctcatgcacttgctgcag
|     |   ||||||  ||   || || ||||||||| ||||  | ||  ||||||| ||||||||||||||||| |||||||| || |||||||||||||  ||  || |||||  |   |     || ||||||  | | ||  |    ||  |  |||  | || ||||     | ||||| ||||| |||
CGGTGGCCAAAGAAGTTGTGACGGGTCTTTTTGTTCCAAAACTTCAGGGGCATGGTGCCACTGGTCTTGCAATTTCACTCCTTGGGGCAATGGTTATGCCgtgggtgcctcatgtcttttgcagccatttctttttctgtcccttaatatgtaatgtgatctaatgctatgtt--tctttatgcatttgcttcag

upper sequence: Vv09s0070g00210.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA07G02680.1 (Glycine max), 5'ss of exon 6
CCAATTCTTCAGAAGTCTTGCGTGGACTCTTTGTTCCACAACTCAAAGGAAATGGTGCTACTGGTCTTGCAATTTCCCTCCTTGGTGCTATGGTTATGCCgtaagtttcttatgtccatgagaagtgcttatttttccatgcatttttcaaaaaaatattctcttctt-tgttgactctcatgcacttgctgcag-------
|     |   ||||||  ||   || || ||||||||| ||||  | ||  ||||||| ||||||||||||||||| |||||||| || |||||||||||||  || ||| |  ||  |   |     || ||||||  | | ||     | ||  |  |||  |  | ||||     | || || ||| |           
CGGTGGCCAAAGAAGTTGTGGCCGGTCTTTTTGTTCCAAAACTTCAGGGGCATGGTGCCACTGGTCTTGCAATTTCACTCCTTGGGGCAATGGTTATGCCgtgggtgtctcacttcttttgcatccatttctttttctgtcccttaacatataatgtgatctaatgatatgtt--tctttatacatttgtttttattatgat

upper sequence: Vv09s0070g00210.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT1G80830.1 (Arabidopsis thaliana), 5'ss of exon 7
CCAATTCTTCAGAAGTCTTGCGTGGACTCTTTGTTCCACAACTCAAAGGAAATGGTGCTACTGGTCTTGCAATTTCCCTCCTTGGTGCTATGGTTATGCCgtaagtttcttatgtc-catgagaagtgcttatttttccatgcatttttcaaaaaaatattctcttctttgttgactctcatgcacttgctgcag
|  |  |   ||||||| | | ||| ||||||||||| ||||| |||||||||||||| |||||||| ||||| ||  | || || || |||||||||||||||| |   | | || | | |  |    | ||  |   || | ||  | | || || || || |||| ||  |                     
CAGACCCAGGAGAAGTCCTACATGGTCTCTTTGTTCCTCAACTTAAAGGAAATGGTGCAACTGGTCTCGCAATCTCTTTGCTCGGAGCCATGGTTATGCCgtaagctcactctctctcttcaccaccattcatcataagattctttgctgagaacaacat-ctgttctctgcag---------------------