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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTCGTCTTCCTATCATCCAGgtttgtggtgtagtcatctactcaagtgcttgaatttcacatctagttctgcacttgatgcattttacatcctagggtcttcttacataaaacttggaattggtcacacggactcgaaatgtttaagccaaaagctgtgtaacttcagccttatacaattataag

Basic information

species Vitis vinifera
transcript Vv09s0054g01520.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g01520.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA07G00330.1 (Glycine max), 5'ss of exon 5
ATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTCGTCTTCCTAT-CATCCAGgtttgtggtgtagtcatctactcaagtgcttgaatttcacatctagttctgcacttgatgcat-tttacatcctagggtcttcttacataaaacttggaattggtcacacggactcgaaatgtttaagccaaaagctgtgtaacttcagccttatacaattataag
||  | ||  | ||||| ||||  |||||||||||||||||||||||||||||| || | || |||  ||||||||| |||||||||         ||  || || | ||    || | |||  ||    |||  | |  ||||  || |||| ||    |  | | |     | || | |  |||   ||||    ||   || | ||  ||                                      
ATACTCGGTGTATTTGATTGGTGCGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCTTTTCTTCCTATGCATCCAGgt---------ag--atttaattaa---ttttattttgtcactctgtttggaa--tgatatatatttaaattggtgaatatacaatatttaatcattaaatc--tcacttccaccttaactattgtag--------------------------------------

upper sequence: Vv09s0054g01520.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA08G24160.1 (Glycine max), 5'ss of exon 5
ATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTCGTCTTCCTAT-CATCCAGgtttgtggtgtagtcatctactcaagtgcttgaatttcacatctagttctgcacttgatgcattttacatcctagggtcttcttacataaaacttggaattggtcacacggactcgaaatgtttaagccaaaagctgtgtaacttcagccttatacaattataag
||  ||||  | ||||| ||||  |||||||||||||||||||||||||||||| || | || ||   ||||||||| ||||| ||| |           || |  | ||   ||| | |||  ||     ||  | |    ||  |||| |  |  |          |  ||||   ||  |  |   |||    ||   || | ||  ||                                      
ATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCGTTTCTTCCTATGCATCCGGgtat-----------atttgattaa---ctttattttgtcactctttttggaatgatatatatttaaattggtgaatatacaatgtataatcattaaatct---cacttttaccttaattattgtag--------------------------------------

upper sequence: Vv09s0054g01520.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA03G27620.1 (Glycine max), 5'ss of exon 2
ATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTCGTCTTCCTAT-CATCCAGgtttgtggtgtagtcatctactcaagtgcttgaatttcacatctagttctgcacttgatgcattttacatcctagggtcttcttacataaaacttggaattggtcacacggactcgaaatgtttaagccaaaagctgtgtaacttcagccttatacaattataag
||  ||||  | ||||| ||||  |||||||||||||||||||||||||||||| |  | |||||   ||||||||| ||||||||||     | |  |  | || |            | ||||   |  |||  || |  |||   |||| ||  | |  | | |     | || | | ||||   |||     ||   || | ||  ||                                      
ATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATTATTCCTTCGTTTCTTCCTATGCATCCAGgttgagtttattttattttattt-----------tgtcactctttattcaacaatatatg---tttaaattgttgaatatacgatgtttaatcattgaatc--tcattttcaccataattattgtag--------------------------------------