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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGTGAAAGAAGGATGGTATGATGGGGGTAGCATTGCCTTTGCAGTGTTTCTTGTTATATTTGTTACTGgtattggcttgatgttcattattgtcttttgagtgcggctcttggctagaattaacttgaagtcaacttgatcatgattttataatagtttaaatttcat...

Basic information

species Vitis vinifera
transcript Vv09s0018g02130.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os02g08018.1 (Oryza sativa), 5'ss of exon 4
GGTGTGAAAGAAGGATGGTATGATGGGGGTAGCATTGCCTTTGCAGTGTTTCTTGTTATATTTGTTACTGgtat-tggcttgatgttcattattgtcttttgagtgcggctcttggctag--aattaacttgaagtcaacttgatca-tgattttataatagtttaaatttcat
||  | |||||||||||||| || || |  |||||||| ||||| || |||||||| ||| |||||||||||||     |    |    ||  | ||| | |      | ||||  |||   | || | | |  |  |  || ||   ||| |  |  ||  ||  | |||   
GGCATCAAAGAAGGATGGTACGACGGTGCAAGCATTGCATTTGCGGTCTTTCTTGTCATACTTGTTACTGgtatgctattcttcgcctgttcatctctat-gctaattgatcttctctaagcagttcaatagttgagatattaataggtgaatacaccatcattatacttt---

upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G140328_T02 (Zea mays), 5'ss of exon 7
GGTGTGAAAGAAGGATGGTATGATGGGGGTAGCATTGCCTTTGCAGTGTTTCTTGTTATATTTGTTACTGgtat-tggcttgatgttcattattgtcttttgagtgcggctcttggctagaattaacttgaagtcaacttgatcatgattttataatagtttaaatttcat
||  | |||||||| ||||||||||| |  |||||||||||||| ||  |||| ||| |||||||||| ||| |    ||     ||   | |    || || || |           | ||  |   ||     |     ||||  ||  |  | || | ||   |  | 
GGCATAAAAGAAGGCTGGTATGATGGAGCGAGCATTGCCTTTGCTGTTCTTCTAGTTGTATTTGTTACAGgtgtgccactatgacttttctctgactttctgtgttctttgtcatataacaagcagtgtgtttctattcacatca-aatcatcaagtaatatatgataaaa

upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G391042_T02 (Zea mays), 5'ss of exon 7
GGTGTGAAAGAAGGATGGTATGATGGGGGTAGCATTGCCTTTGCAGTGTTTCTTGTTATATTTGTTACTGgtattggcttgatgttcattattgtcttttgagtgcggctcttggctagaattaacttgaagtcaacttg---atcatgattttataatagtttaaatttcat-
||  | |||||||| ||||||||||| |  |||||||||||||| ||  |||| ||| |||||||||| ||| |     |     |  |   ||  |||    || |    ||| |    | |  ||| |    ||  |      | | ||    |  || || || |   |  
GGCATAAAAGAAGGCTGGTATGATGGAGCGAGCATTGCCTTTGCTGTTCTTCTAGTTGTATTTGTTACAGgtgtgccactatgacttttctctgattttc---tgtgttctttgtcatatactcccttcatcctaatatataaggcgtaatcacttttta-ttcaagtcctaca

upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA07G00630.1 (Glycine max), 5'ss of exon 9
GGTGTGAAAGAAGGATGGTATGATGGGGGTAGCATTGCCTTTGCAGTGTTTCTTGTTATATTTGTTACTGgtattggcttgat--gttcattattgtcttt-tgagtgcggctcttggctagaattaacttgaagtcaacttgatcatgattttataatagtttaaatttcat
||| ||   |||||||||||||||||||| |||||||| ||||||||  ||||||| ||  | |||||||||||||  |  ||  | |  || || | ||| | | |     |  |   | || |||  |  |    ||  |   ||||  | ||  | ||    |  ||   
GGTTTGGCTGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTCTTCTTGTCATTGTAGTTACTGgtattgtatatattagatagttgttttttttattattataaataatccatggatttacttcaatcaaaatctatacatgtgtataggagagacatatgtt---

upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA08G23760.1 (Glycine max), 5'ss of exon 9
GGTGTGAAAGAAGGATGGTATGATGGGGGTAGCATTGCCTTTGCAGTGTTTCTTGTTATATTTGTTACTGgtattggcttgatgttcattattgtcttttgagtgcggctcttggctagaattaact--tgaagtcaacttgatcatgat-tttataatagtttaaatttcat---
||| ||   |||||||||||||||||||| |||||||| ||||||||  ||||||| ||  | ||||| |||||||  |  || |  ||  || | |||||  |     | |||  ||  | |||    || | | |  |  ||||  || | || |   || || |    |    
GGTTTGGCTGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTCTTCTTGTCATTGTAGTTACAGgtattgtatatat-tatatagtttttttttgttt-----ttttgtttatgaataatccatggatttacttcaatcaaaatatctacacatgtctataggagagaca