Sequence
atgc intronic sequence ATGC exonic sequenceCTGACATTACGAATAGAGTTCCTATAATTGTTACAGGAAATGATTTTTCAACAATCTATGCTCCCTTGATTCGTGATGGAAGGATGGACAAGTTCTACTGgtatgtgtttattttgtgtctttgataaacacttcttgtttgcctataaaaaaggaaagaaactactctatgattttcatttacatatctatcttaaaaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0018g01270.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os04g56320.1 (Oryza sativa), 5'ss of exon 8
CTGACATTACGAATAGAGTTCCTATAATTGTTACAGGAAATGATTTTTCAACAATCTATGCTCCCTTGATTCGTGATGGAAGGATGGACAAGTTCTACTGgtatgtgtttattttgtgtctttgataaacacttcttgtttgcctataaaaaaggaaa-------gaaactactctatgattttcattta-catatctatcttaaaaa-------------------------------
|||| | || | ||||| || ||||| ||||| |||||||||||||| ||| | ||||||||||||||||||||||| |||||||| |||||||| |||||||| | || | || | ||| || || ||| || | | ||| | ||| ||| | ||| |||| || | | | ||| |
CTGATGTAACACACAGAGTGCCAATAATAGTTACCGGAAATGATTTTTCGACACTGTATGCTCCCTTGATTCGTGATGGGAGGATGGAAAAGTTCTATTGgtatgt--tcgttct-tgcatctgaataaattttgttgcaacaaagtacagactgaattttatttgcaacaactagtcggatttaatttggcaaaaaaacttcaaagaatgatacttgaatgtgatatgtgattaatag
upper sequence: Vv09s0018g01270.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G039345_T01 (Zea mays), 5'ss of exon 2
CTGACATTACGAATAGAGTTCCTATAATTGTTACAGGAAATGATTTTTCAACAATCTATGCTCCCTTGATTCGTGATGGAAGGATGGACAAGTTCTACTGgtatgt-gtttattttgtgtctttgataaacacttcttgtttgcctataaaaa---aggaaagaaactactctatgattttcatttacatatctatcttaaaaa
|||| |||| | || || || ||||| ||||| ||||||||||||||||| | ||||| ||||| ||||||||||| || ||||| || |||||||||||||| || | || | | | ||| | | || | ||| | | | || | | | | | | ||| || |
CTGATGTTACACACAGGGTGCCAATAATAGTTACTGGAAATGATTTTTCAACTCTATATGCACCCTTAATTCGTGATGGGAGAATGGAAAAATTCTACTGgtatgttgtcctatctggagcagttctgtacaatgatgtagcaccaactgaaacttttggactggagtattttgctttagccttgtgtataattaggtgt----
upper sequence: Vv09s0018g01270.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA13G44940.1 (Glycine max), 5'ss of exon 8
CTGACATTACGAATAGAGTTCCTATAATTGTTACAGGAAATGATTTTTCAACAATCTATGCTCCCTTGATTCGTGATGGAAGGATGGACAAGTTCTACTGgtatgtgtttattttgtgtctttgataaacacttcttgtttgcctataaaaaaggaaagaaactactctatgattttcatttacatatctatcttaaaaa---
| || | || || ||| |||| || ||||| ||||| || ||||||||||| | || ||||| |||| || |||||||||||||| ||||| |||||||| | | || | || | || || | | || || | | | | || |||| || | | || | ||
CAGATGTCACAAACAGAATTCCAATCATTGTAACAGGGAACGATTTTTCAACTCTTTACGCTCCACTGATACGCGATGGAAGGATGGATAAGTTTTACTGgtaaat-tgtaatccgtcttattc-taggtttattatacttaccattttgagggagtttttgagggtacat-atttagatacagggttttagttgaagtttta
upper sequence: Vv09s0018g01270.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT1G73110.1 (Arabidopsis thaliana), 5'ss of exon 8
CTGACATTACGAATAGAGTTCCTATAATTGTTACAGGAAATGATTTTTCAACAATCTATGCTCCCTTGATTCGTGATGGAAGGATGGACAAGTTCTACTGgtatgtgtttattttgtgtctttgataaacacttcttgtttgcctataaaaaaggaaa-gaaactactctatgattttcatttacatatctatcttaaaaa
||||||| || ||||||||| ||||||| ||||| || ||||| || ||| | |||||||| |||| ||||| ||||| ||||| |||||||||||||| | || | | | || | || | | || | || || | | || | || | | | | |
CTGACATGGTAAACAGAGTTCCTCTAATTGTCACAGGGAACGATTTCTCTACACTGTATGCTCCACTGATCCGTGAAGGAAGAATGGAGAAGTTCTACTGgtaa----tcatgatacatagcttgcaatccattttcctgcaactgtggaatcttttctgacaacaaactgaagtgtttgatgctaaaaaaaaaacag---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122690141|gb|EC948450.1|EC948450EST: ACAATCTATGCTCCCTTGATTCGTGATGGAAGGATGGACAAGTTCTACTG GCAGCCTACCCATGAAGATATCATAAATATTGTCCATAGGATGTATGAGAA
genomic: ACAATCTATGCTCCCTTGATTCGTGATGGAAGGATGGACAAGTTCTACTGgtatgtgttt ... tgtgaaacagGCAGCCTACCCATGAAGATATCATAAATATTGTCGATAGGATGTATGAGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGACATTACGAATAGAGTTCCTATAATTGTTACAGGAAATGATTTTTCAACAATCTATGCTCCCTTGATTCGTGATGGAAGGATGGACAAGTTCTACTGgtatgtgtttattttgtgtctttgataaacacttcttgtttgcctataaaaaaggaaagaaactactctatgattttcatttacatatctatcttaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaaa