Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGACTTAACTACCTTTGTCCTCGGTTCTTTCCAGCCCCAGGTTTTTGGTCTCTTCGGCATCTTAACCACTCAATTCCAGAATTGATTGCTTCAAGTGAGgtttgtttgttatcacattgttttgacacggcaatgattagtttttagtagctacattttatcatgatttggggtaattgaacagtttgtttcttgtctccag

Basic information

species Vitis vinifera
transcript Vv09s0002g04000.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g04000.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA15G02070.1 (Glycine max), 5'ss of exon 9
------------------------------------------------ACGACTTAACTACCTTTGTCCTCGGTTCTTTCCAGCCCCAGGTTTTTGGTCTCTTCGGCATCTTAACCACTCAATTCCAGAATTGATTGCTTCAAGTGAGgtttgtttgttatcacattgttttgacacggcaatgattagtttttagtagctacattttatcatgatttggggtaattgaacagtttgtttcttgtctccag
                                                ||||||||| ||| | ||||||| |||||||||||| ||||| || ||||||||||   |||   |   |||||     |  |   |||||||| |||||||||||       ||| | | ||  | | |      ||| ||||| | |||  | |  | || | ||  |     |                           
GAAGAATGTAGAGATTCCTATTTTGAAAGCTAGTGCAAGAATTGCAACACGACTTAATTACTTGTGTCCTCAGTTCTTTCCAGCTCCAGGATTATGgtctcttcctaatcacgatagctcaaaatttggctgtcttgcttcacgtgaggtttgt-------cacgt-gattgaagatga----aatttgtttt-actagacaaacatgattaagacataaatgag--------------------------