Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCTTAGCATTATCCCTCAGGAGCCCACTCTTTTCAAGGGTAGCATTCGAACTAACTTGGACCCTCTAGGCCTTTACTCTGACGATGAAATATGGGAGgttagccctactcagtttaatggtcgttctagtgacagttccaattgtttgtcagcaacttctagttcaaagcagtttagatatcaataatatgaaaagaatcacatctttgattggttcagttcttcatttgcag

Basic information

species Vitis vinifera
transcript Vv09s0002g02440.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g02440.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA08G20770.2 (Glycine max), 5'ss of exon 8
GAAGCTTAGCATTATCCCTCAGGAGCCCACTCTTTTCAAGGGTAGCATTCGAACTAACTTGGACCCTCTAGGCCTTTACTCTGACGATGAAATATGGGAGgttagc---cctactcagt--ttaatggtcgttctagtgacagttccaattgtttgtcagc-aacttctagttcaaagcag-tttagatatcaataatatgaaaagaatcacatctttgattggttcagttcttcatttgcag
|||||| ||||| |||||||| || || |||||||||||||| |||||| | || |||||||||||||||||||| ||||| || ||||||||||||||||| |     |   ||| |   || |     ||| || | | | | ||| |   || |  |  | ||| |   | |   ||| ||| | |||   |||| || | | |                                    
GAAGCTAAGCATCATCCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGGACCAACTTGGACCCTCTAGGCCTGTACTCAGATGATGAAATATGGGAGgtgaatgaactagctctgcagttgaaaaatgttatattta-aataccattctcttctatgtgagcttttcaataagctcaggtttggttatgtttaatttgtatatag-----------------------------------

upper sequence: Vv09s0002g02440.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA08G20780.1 (Glycine max), 5'ss of exon 10
GAAGCTTAGCATTATCCCTCAGGAGCCCACTCTTTTCAAGGGTAGCATTCGAACTAACTTGGACCCTCTAGGCCTTTACTCTGACGATGAAATATGGGAGgttagcc--ctactcagtttaatggtcgttctagtgacagttccaattgtttgtcagcaacttctagtt-caaagca---gtttagatatcaataatatgaaaagaatcacatctttgattggttcagttcttcatttgcag
 ||||| ||||| || ||||| || || |||||||||||||| ||||||||||  ||||||||||||||| |||| |||||||| |||||||||||| |||| |  |  ||         | ||      |  || | |  |  |||||||| ||  | | ||||| |  | |||||   |||| |    |  | || |  | ||                                     
AAAGCTAAGCATCATTCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTCGAAAGAACTTGGACCCTCTATGCCTGTACTCTGATGATGAAATATGGAAGgtaaatcaactggctctacaattgaaaaaacatgtaataaattgaattgtttttct-ctatttctattcactaagcaaaggttttgtgggctttcatttttacag-------------------------------------

upper sequence: Vv09s0002g02440.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA07G01390.1 (Glycine max), 5'ss of exon 10
GAAGCTTAGCATTATCCCTCAGGAGCCCACTCTTTTCAAGGGTAGCATTCGAACTAACTTGGACCCTCTAGGCCTTTACTCTGACGATGAAATATGGGAGgttagccctactcagtttaatggtcgttctagtgacagttccaattgtttgtcagcaacttctagttcaaagcagtttagatatcaataatatgaaaagaatcacatctttgattggttcagttcttcatttgcag
 ||||| ||||| |||||||| || || |||||||||||||| |||||| |||| |||||||||||||||||||| ||||| || |||||  ||||| |||| |     |   || ||    ||        ||  |  |    |  |||       | | || |  |||  || | |  |  | | |  |    | |    ||||| | | || |                    
AAAGCTAAGCATCATCCCTCAAGAACCAACTCTTTTCAAGGGAAGCATTAGAACCAACTTGGACCCTCTAGGCCTGTACTCAGATGATGATTTATGGAAGgtgaatg--agctagctttgcagt--------tggaaaatatgttaatttaaagaggagtgctgg--caacacactctctagcttactctttcttaca----cacatttcttatag--------------------

upper sequence: Vv09s0002g02440.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA08G20360.1 (Glycine max), 5'ss of exon 9
GAAGCTTAGCATTATCCCTCAGGAGCCCACTCTTTTCAAGGGTAGCATTCGAACTAACTTGGACCCTCTAGGCCTTTACTCTGACGATGAAATATGGGAGgttagccctactcagtttaatggtcgttctagtgacagttccaattgtttgtcagcaacttctagttcaaagcagtttagatatcaataatatgaaaagaatcacatctttgattggttcagttcttcatttgcag
||| |||||||| |||||||| || || |||||||||||||| |||||| | || ||| |||||||||||||||| ||    || |||||||||||| |||| |    |    || |  |     |    | |   |      |    |||| | |   |||  |    |  || |      | |  | |||  |   || |   || |||                         
GAAACTTAGCATCATCCCTCAAGAACCTACTCTTTTCAAGGGCAGCATTAGGACCAACCTGGACCCTCTAGGCCTCTATGACGATGATGAAATATGGAAGgtgaa---tgaatagctccacaactgaaaaatttgtaacaagtaaatcttgttatctctttcacgagtcattcaataagtgcagcttttataaaatttgatttgtatatttag-----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110732027|gb|EE106952.1|EE106952
EST:     GAACTAACTTGGACCCTCTAGGCCTTTACTCTGACGATGAAATATGGGAG                         GCTCTTGAGAAGTGTCAGCTTAAGGCAACAATCAGCAGCCTCCCAAACTTA
genomic: GAACTAACTTGGACCCTCTAGGCCTTTACTCTGACGATGAAATATGGGAGgttagcccta ... tcatttgcagGCTCTTGAGAAGTGTCAGCTTAAGGCAACAATCAGCAGCCTCCCAAACTTA
EST: gi|110694968|gb|EE072449.1|EE072449
EST:     AACTAACTTGGACCCTCTTAG-CCTTTACTCTGACGATGAAATATGGGAA                         GCTCTTGAGAA
genomic: AACTAACTTGGACCCTCT-AGGCCTTTACTCTGACGATGAAATATGGGAGgttagcccta ... tcatttgcagGCTCTTGAGAA
EST: gi|110362756|gb|EC926308.1|EC926308
EST:     GAACTAACTTGGACCCTCTAGGCCTTTACTCTGACGATGAAATATGGGAG                         GCTCTTGAGAAGTGTCAGCTTAAGGCAACAATCAGCAGCCTCCCAAACTTA
genomic: GAACTAACTTGGACCCTCTAGGCCTTTACTCTGACGATGAAATATGGGAGgttagcccta ... tcatttgcagGCTCTTGAGAAGTGTCAGCTTAAGGCAACAATCAGCAGCCTCCCAAACTTA
EST: gi|110381535|gb|EC934720.1|EC934720
EST:     GAACTAACTTGGACCCTCTAGGCCTTTACTCTGACGATGAAATATGGGAG                         GCTCTTGAGAAGTGTCAGCTTAAGGCAACAATCAGCAGCCTCCCAAACTTA
genomic: GAACTAACTTGGACCCTCTAGGCCTTTACTCTGACGATGAAATATGGGAGgttagcccta ... tcatttgcagGCTCTTGAGAAGTGTCAGCTTAAGGCAACAATCAGCAGCCTCCCAAACTTA
EST: gi|37190464|gb|CF609813.1|CF609813
EST:     GAACTAACTTGGACCCTCTAGGCCTTTACTCTGACGATGAAATATGGGAG                         GCTCTTGAGAAGTGTCAGCTTAAGGCAACAATCAGGAGCCTCCCAAACTTA
genomic: GAACTAACTTGGACCCTCTAGGCCTTTACTCTGACGATGAAATATGGGAGgttagcccta ... tcatttgcagGCTCTTGAGAAGTGTCAGCTTAAGGCAACAATCAGCAGCCTCCCAAACTTA