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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCATGCACATACCATCTGAGCCTCCTGCAATTGTGGATGGAAAGCGACCACCATCTTCATGGCCTTCCAAGGGTAGGATAGAGTTACAAAATCTCAAGgtaaggaagctattaatcaagttcatctcttaaatgatgtgtctcatagcaacctcttgaaagaatgctctggtgacaatacttaaaagccgacgattctgtcttctggttggtttcag

Basic information

species Vitis vinifera
transcript Vv09s0002g02430.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g02430.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA08G20360.1 (Glycine max), 5'ss of exon 8
GTTCATGCACATACCATCTGAGCCTCCTGCAATTGTGGATGGAAAGCGACCACCATCTTCATGGCCTTCCAAGGGTAGGATAGAGTTACAAAATCTCAAGgtaaggaagctattaatcaagttcatctcttaaatgatgtgtctcatagcaacctcttgaaagaatgctc-tggtgacaatacttaaaagccgacgattctgtcttctggttggtttcag------------------------------------------------------
 |||||  | |||||| | |||||||| || |||||||| |  ||  |||| ||||||||||||||||||||||||||||| ||  | | |   ||  ||||||| |  ||| | |  |   |    |  |  ||  | | |||  ||      | | |      |  |  |         || || |  |   | | | | | |||   ||  ||                                                          
ATTCATTGAAATACCAGCAGAGCCTCCAGCCATTGTGGAGGATAACAGACCTCCATCTTCATGGCCTTCCAAGGGTAGGATTGATCTTCGAGCCCTAGAGgtaagaagactaatcaatagcctatgtttatggattttat-tctggtaaagttgtatcgttgtccttttaatttcttttgcacctatatacttgcaacttt-tattcattttatttctgacaattggacagacaaattcaagtctttttggtgttttttcgacattgatttcag

upper sequence: Vv09s0002g02430.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA07G01390.1 (Glycine max), 5'ss of exon 8
GTTCATGCACATACCATCTGAGCCTCCTGCAATTGTGGATGGAAAGCGACCACCATCTTCATGGCCTTCCAAGGGTAGGATAGAGTTACAAAATCTCAAGgtaaggaagctattaatcaagttcatctcttaaatgatgtgtctcatagcaacctcttgaaagaatgctctggtgacaatacttaaaagccgacgattctgtcttctggttggtttcag
     | ||  | |||   ||||||||||| |||||||| |  || || || |||||||||||||||||||| || ||||| ||  | |||    |  ||| || |  || ||   |  | ||| |   ||   |  | | | |  |||                                                                      
-----TTCAGCTTCCAGAAGAGCCTCCTGCCATTGTGGAGGACAACCGGCCTCCATCTTCATGGCCTTCCAAAGGCAGGATTGACCTTCAAGCCTTAGAGGCAAAgttgc-atccttgtatttccttattttttttctctttattttag----------------------------------------------------------------------

upper sequence: Vv09s0002g02430.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA07G01380.1 (Glycine max), 5'ss of exon 2
GTTCATGCACATACCATCTGAGCCTCCTGCAATTGTGGATGGAAAGCGACCACCATCTTCATGGCCTTCCAAGGGTAGGATAGAGTTACAAAATCTCAAGgtaaggaagctattaatcaagttcatctcttaaatgatgtgtctcatagcaacctcttgaaagaatgctctggtgacaatacttaaaagccgacgattctgtcttctggttggtttcag
          || |||   ||||||||   |||  |||| |   |  | |||||||||||||||||||| || || |||||||||||  ||  | | |||||||  ||     | |  |  || || |  ||     | |  | |    |  |   ||| || | |  ||   |     |||   |     ||| |  |       || ||  ||||||
----------ATGCCACAAGAGCCTCCAAAAATATTGGAGGATGAAAGGCCACCATCTTCATGGCCTTCTAATGGCAGGATAGAGTTTAAAGCTTTGAAGgtaaacaaa----tgaaaagattaatatagtaggaattctaaccccatccctcggtttgtaacattattccacttttggtac---agtttggaccaaccaacacattg-ttattttcag