Sequence
atgc intronic sequence ATGC exonic sequenceAGGAACTTGGTTAAATTGATTGGCATCTGCACTGAGGAGCATACCCGCTGCCTCGTCTATGAACTTGTTCCAAATGGAAGTGTGGAATCACATTTACATGgtagatacaactttgaaaaaaataaaaataaaaattctatcttaaaatttggatgaaattttagatatattttttttattgtttgattctctgagaaaattctttgaatttgttgtttctgtctaatatcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g02220.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os01g51290.1 (Oryza sativa), 5'ss of exon 11
AGGAACTTGGTTAAATTGATTGGCATCTGCACTGAGGAGCATACCCGCTGCCTCGTCTATGAACTTGTTCCAAATGGAAGTGTGGAATCACATTTACATGgtagatacaactttgaaaaaaataaaaataaaaattctatcttaaaatttggatgaaattttagatatattttttttattgtttgattctctgagaaaattctttgaatttgttgtttctgtctaatatcag
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AGAAACCTGGTTAAGTTGATAGGTATATGCACAGAAGAACATATCCGGTGTCTTGTGTATGAGCTTGTTCCAAATGGTAGTGTGGAATCTCACTTGCACGgtaat----attttgttctcttttt---------ttttcctctgaacagtttctaaggcatcatttgttactttatcgtgtctattttgcttggagagatgcatcaaaccagt-------------------
upper sequence: Vv09s0002g02220.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G404207_T01 (Zea mays), 5'ss of exon 4
AGGAACTTGGTTAAATTGATTGGCATCTGCACTGAGGAGCATACCCGCTGCCTCGTCTATGAACTTGTTCCAAATGGAAGTGTGGAATCACATTTACATGgtaga--tacaactttgaaaaaaataaaaataaaaattctatcttaaaatttggatgaaattttagatatattttttttattgtttgattctctgagaaaattctttgaatttgttgtttctgtctaatatcag
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AGGAACTTGGTTAAGCTGATAGGTATATGCACAGAGGGGCATAGCCGATGTTTGGTATATGAGCTTGTTCCAAATGGCAGTGTGGAATCTCACTTGCATGgtaaaattccttctccaattgacaagaaaggccagattatatttctatagtagaatagagctgttataacagtgttacc--cacacgatacatatagggggt--------------------------------
upper sequence: Vv09s0002g02220.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G330298_T01 (Zea mays), 5'ss of exon 5
AGGAACTTGGTTAAATTGATTGGCATCTGCACTGAGGAGCATACCCGCTGCCTCGTCTATGAACTTGTTCCAAATGGAAGTGTGGAATCACATTTACATGgtagata--caactttgaaaaaaataaaaataaaaattctatcttaaaatttggatgaaattttagatatattttttttattgtttgattctctgagaaaattctttgaatttgttgtttctgtctaatatcag
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AGGAACTTGGTTAAGCTGATAGGTATATGCACAGAGGGGCATAGCCGATGTTTGGTTTATGAGCTTGTTCCGAATGGCAGTGTGGAATCTCACTTGCATGgtaaatttccttctgtgccgtaacttcactttctaaggctttcttcatttcatcatataacttctctt-tcttaatttagtcattttattggcaagaggtg---------------------------------
upper sequence: Vv09s0002g02220.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA07G01210.1 (Glycine max), 5'ss of exon 9
AGGAACTTGGTTAAATTGATTGGCATCTGCACTGAGGAGCATACCCGCTGCCTCGTCTATGAACTTGTTCCAAATGGAAGTGTGGAATCACATTTACATGgtagatacaactttga--aaaaaataaaaataaaaattctatcttaaaatttggatgaaattttagatatattttttttattgtttgattctctgagaaaattctttgaatttgttgtttctgtctaatatcag
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AGAAATTTAGTTAAATTACTAGGTATATGCATAGAGAAACAGACTCGCTGCTTAGTTTATGAGCTTGTCCCTAATGGAAGTGTGGAATCCCACTTACATGgtaaacaaaagctcagttaaagaatttcatcaataattttggaagtaaaaaatcatca--tttttgttttaaaaaaatcatctttt--tttttggaaactgacttttgaatactctctattttcccag------
upper sequence: Vv09s0002g02220.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: PP1S95_115V6.1 (Physcomitrella patens), 5'ss of exon 6
---AGGAACTTGGTTAAATTGATTGGCATCTGCACTGAGGAGCATACCCGCTGCCTCGTCTATGAACTTGTTCCAAATGGAAGTGTGGAATCACATTTACATGgtagatacaactttgaaaaaaataaaaataaaaattctatcttaaaatttggatgaaattttagatatattttttttattgtttgattctctgagaaaattctttgaatttgttgtttctgtctaatatcag
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CATCGCAACCTTGTGAGGCTAATTGGCATCTGCACTGAGGAA---ATACGATGTTTGGTTTATGAGCTTATTACAAATGGCAGTGTGGAATCTCATTTACATGgtatgtac---ctgaaaatagagaccacttttgtgtacttctttaaatcgcacgtcacttgtgaagatatggcggtgaactatggctgatttaatcatattttct---cttgtaatcctcag----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161715160|gb|FC063982.1|FC063982EST: CCTCGTCTATGAACTTGTTCCAAATGGAAGTGTGGAATCACATTTACATG GAGTTGACAAGGAAGCTTCTCCTCTTGATTGGGGTGCACGAATGAAGATTG
genomic: CCTCGTCTATGAACTTGTTCCAAATGGAAGTGTGGAATCACATTTACATGgtagatacaa ... ctaatatcagGAGTTGACAAGGAAGCTTCTCCTCTTGATTGGGGTGCACGAATGAAGATTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGAACTTGGTTAAATTGATTGGCATCTGCACTGAGGAGCATACCCGCTGCCTCGTCTATGAACTTGTTCCAAATGGAAGTGTGGAATCACATTTACATGgtagatacaactttgaaaaaaataaaaataaaaattctatcttaaaatttggatgaaattttagatatattttttttattgtttgattctctgagaaaattctttgaatttgttgtttctgtctaatatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG