1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCAGCAAGTTTAAGAATAGCTGAGCAATATATCCAGGCTTTCAGTATGATTGCCAAGGAGgtaaggaactgacctgttaaataccatactcgggtaatctgatgtcgtgctcagctgatttactgaagtatttcccatttctctcttctttttttcggccatgctttcttag
species | Vitis vinifera |
transcript | Vv09s0002g01630.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TAAGAATAGCTGAGCAATATATCCAGGCTTTCAGTATGATTGCCAAGGAG GGCACAACCATGTTGCTTCCTAGCACTGCCTCCAATCCTGCCAACATGATAEST: gi|30324273|gb|CD007535.1|CD007535
genomic: TAAGAATAGCTGAGCAATATATCCAGGCTTTCAGTATGATTGCCAAGGAGgtaaggaact ... gctttcttagGGCACAACCATGTTGCTTCCTAGCACTGCCTCCAATCCTGCCAACATGATA
EST: TAAGAATAGCTGAGCAATATATCCAGGCTTTCAGTATGATTGCCAAGGAG GGCACAACCATGTTGCTTCCTAGCACTGCCTCCAATCCTGCCAACATGATAEST: gi|110377134|gb|EC942193.1|EC942193
genomic: TAAGAATAGCTGAGCAATATATCCAGGCTTTCAGTATGATTGCCAAGGAGgtaaggaact ... gctttcttagGGCACAACCATGTTGCTTCCTAGCACTGCCTCCAATCCTGCCAACATGATA
EST: TAAGAATAGCTGAGCAATATATCCAGGCTTTCAGTATGATTGCCAAGGAG GGCACAACCATGTTGCTTCCTAGCACTGCCTCCAATCCTGCCAACATGATAEST: gi|110393459|gb|EC958711.1|EC958711
genomic: TAAGAATAGCTGAGCAATATATCCAGGCTTTCAGTATGATTGCCAAGGAGgtaaggaact ... gctttcttagGGCACAACCATGTTGCTTCCTAGCACTGCCTCCAATCCTGCCAACATGATA
EST: TAAGAATAGCTGAGCAATATATCCAGGCTTTCAGTATGATTGCCAAGGAG GGCACAACCATGTTGCTTCCTAGCACTGCCTCCAATCCTGCCAACATGATAEST: gi|30320908|gb|CD004170.1|CD004170
genomic: TAAGAATAGCTGAGCAATATATCCAGGCTTTCAGTATGATTGCCAAGGAGgtaaggaact ... gctttcttagGGCACAACCATGTTGCTTCCTAGCACTGCCTCCAATCCTGCCAACATGATA
EST: TAAGAATAGCTGAGCAATATATCCAGGCTTTCAGTATGATTGCCAAGGAG GGCACAACCATGTTGCTTCCTAGCACTGCCTCCAATCCTGCCAACATGATAEST: gi|110385372|gb|EC949890.1|EC949890
genomic: TAAGAATAGCTGAGCAATATATCCAGGCTTTCAGTATGATTGCCAAGGAGgtaaggaact ... gctttcttagGGCACAACCATGTTGCTTCCTAGCACTGCCTCCAATCCTGCCAACATGATA
EST: TAAGAATAGCTGAGCAATATATCCAGGCTTTCAGTATGATTGCCAAGGAG GGCACAACCATGTTGCTTCCTAGCACTGCCTCCAATCCTGCCAACATGATAEST: gi|30325554|gb|CD008816.1|CD008816
genomic: TAAGAATAGCTGAGCAATATATCCAGGCTTTCAGTATGATTGCCAAGGAGgtaaggaact ... gctttcttagGGCACAACCATGTTGCTTCCTAGCACTGCCTCCAATCCTGCCAACATGATA
EST: TAAGAATAGCTGAGCAATATATCCAGGCTTTCAGTATGATTGCCAAGGAG GGCACAACCATGTTGCTTCCTAGCACTGCCTCCAATCCTGCCAACATGATAEST: gi|30327281|gb|CD010543.1|CD010543
genomic: TAAGAATAGCTGAGCAATATATCCAGGCTTTCAGTATGATTGCCAAGGAGgtaaggaact ... gctttcttagGGCACAACCATGTTGCTTCCTAGCACTGCCTCCAATCCTGCCAACATGATA
EST: TAAGAATAGCTGAGCAATATATCCAGGCTTTCAGTATGATTGCCAAGGAG GGCACAACCATGTTGCTTCCTAGCACTGCCTCCAATCCTGCCAACATGATA
genomic: TAAGAATAGCTGAGCAATATATCCAGGCTTTCAGTATGATTGCCAAGGAGgtaaggaact ... gctttcttagGGCACAACCATGTTGCTTCCTAGCACTGCCTCCAATCCTGCCAACATGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGCAAGTTTAAGAATAGCTGAGCAATATATCCAGGCTTTCAGTATGATTGCCAAGGAGgtaaggaactgacctgttaaataccatactcgggtaatctgatgtcgtgctcagctgatttactgaagtatttcccatttctctcttctttttttcggccatgctttcttag
- - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG