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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGCCCAAAGTGCTATCAATGACATAACCGgtaaggatggtgcagttttacttcagatctgctccttcaccatatttttaactccaacctattttcatgtcagataaagccaaaatgggttctagaaatc...

Basic information

species Vitis vinifera
transcript Vv09s0002g00880.t01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71890328|gb|DT039383.1|DT039383
EST:     GACGCCCAAAGTGCTATCAATGACATAACCG                         GAAAGTGGCTTGGGAGTCGACAGATACGTTGTAACTGGGCAACTAAAGGTG
genomic: GACGCCCAAAGTGCTATCAATGACATAACCGgtaaggatgg ... acacattcagGAAAGTGGCTTGGGAGTCGACAGATACGTTGTAACTGGGCAACTAAAGGTG
EST: gi|33409957|gb|CF215584.1|CF215584
EST:     GATGCCCAAAGTGCTATCAATGACATAACCG                         GAAAGTGGCTTGGGAGTCGACAGATACGTTGTAACTGGGCAACTAAAGGTG
genomic: GACGCCCAAAGTGCTATCAATGACATAACCGgtaaggatgg ... acacattcagGAAAGTGGCTTGGGAGTCGACAGATACGTTGTAACTGGGCAACTAAAGGTG
EST: gi|30253103|gb|CB970654.1|CB970654
EST:     CAAAGTGCTATCAATGACATAACCG                         GAAAGTGGCTTGCCAGTCGACAGATACGTTGTAACTGGGCAACTAAAGGTG
genomic: CAAAGTGCTATCAATGACATAACCGgtaaggatgg ... acacattcagGAAAGTGGCTTGGGAGTCGACAGATACGTTGTAACTGGGCAACTAAAGGTG
EST: gi|161705670|gb|FC055790.1|FC055790
EST:     GATGCCCAAAGTGCTATCAATGACATAACCG                         GAAAGTGGCTTGGGAGTCGACAGATACGTTGTAACTGGGCAACTAAAGGTG
genomic: GACGCCCAAAGTGCTATCAATGACATAACCGgtaaggatgg ... acacattcagGAAAGTGGCTTGGGAGTCGACAGATACGTTGTAACTGGGCAACTAAAGGTG
EST: gi|110694202|gb|EE071104.1|EE071104
EST:     GATGCCCAAAGTGCTATCAATGACATAAACCG                         GAAAGTGGCTTGGGAGTCGACAGATACGTTGTAACTGGGCAACTAAAGGT
genomic: GACGCCCAAAGTGCTATCAATGACATAA-CCGgtaaggatgg ... acacattcagGAAAGTGGCTTGGGAGTCGACAGATACGTTGTAACTGGGCAACTAAAGGT
EST: gi|110696392|gb|EE072470.1|EE072470
EST:     GATGCCCAAAGTGCTATCAATGACATAACCG                         GAAAGTGGCTTGGGAGTCGACAGATACGTTGTAACTGGGCAACTAAAGGTG
genomic: GACGCCCAAAGTGCTATCAATGACATAACCGgtaaggatgg ... acacattcagGAAAGTGGCTTGGGAGTCGACAGATACGTTGTAACTGGGCAACTAAAGGTG
EST: gi|351031018|gb|FQ439054.1|FQ439054
EST:     GACGCCCAAAGTGCTATCAATGACATAACCG                         GAAAGTGGCTTGGGAGTCGACAGATACGTTGTAACTGGGGCA-CTAAAGGT
genomic: GACGCCCAAAGTGCTATCAATGACATAACCGgtaaggatgg ... acacattcagGAAAGTGGCTTGGGAGTCGACAGATACGTTGTAACTGGG-CAACTAAAGGT
EST: gi|161707025|gb|FC055133.1|FC055133
EST:     GATGCCCAAAGTGCTATCAATGACATAACCG                         GAAAGTGGCTTGGGAGTCGACAGATACGT
genomic: GACGCCCAAAGTGCTATCAATGACATAACCGgtaaggatgg ... acacattcagGAAAGTGGCTTGGGAGTCGACAGATACGT
EST: gi|110357183|gb|EC920553.1|EC920553
EST:     GACGCCCAAAGTGCTATCAATGACATAACCG                         GAAAGTGGCTTGGGAGTCGACAGATACGTTGTAACTGGGCAACTAAAGGTG
genomic: GACGCCCAAAGTGCTATCAATGACATAACCGgtaaggatgg ... acacattcagGAAAGTGGCTTGGGAGTCGACAGATACGTTGTAACTGGGCAACTAAAGGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACGCCCAAAGTGCTATCAATGACATAACCGgtaaggatggtgcagttttacttcagatctgctccttcaccatatttttaactccaacctattttcatgtcagataaagccaaaatgggttctagaaatc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gataaag