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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTTGCAAAACAACCAATTTACTGGTAGTATTAATGTCCTTGCCAGTCTTCCTCTTGAAACATTgtaagtggtgtatcaatcaaaatgcatctggagactcatatccctttctttttttcagaaaagatctgttatttggtcctttactatgttcatttttatgtttcttag

Basic information

species Vitis vinifera
transcript Vv09s0002g00150.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g00150.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G153393_T01 (Zea mays), 5'ss of exon 8
GTTTTTGCAAAACAACCAATTTACTGGTAGTATTAATGTCCTTGCCAGTCTTCCTCTTGAAACATTgtaagtggtg---tatcaatcaaaatgcatctggagactcatatccctttctttttttcagaaaagatctgttatttggtcctttactatgttcatttttatgtttcttag
|| |||||| ||||||||||||||||||| ||| |||||| | |||| ||| || |||||||| |||| |||  |    | | ||    ||||   ||  |    ||| | | || |  | ||||| ||      ||    | |                                 
GTATTTGCAGAACAACCAATTTACTGGTAATATCAATGTCTTAGCCAATCTCCCCCTTGAAACTTTgtgagtaatcaactgtgaaattcaatggtgctttatttgcatgttcattaccatatttcataacttgcttgcctctag---------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110710968|gb|EE087633.1|EE087633
EST:     CAGTTTACTGGTAGTATTAATGTCCTTGCCAGTCTTCCTCTTGAAACATT                         GGATGTTGCCA-TAACCATTTTACTGGCTGGATTCCTGAATCATTGAAGAA
genomic: CAATTTACTGGTAGTATTAATGTCCTTGCCAGTCTTCCTCTTGAAACATTgtaagtggtg ... tgtttcttagGAATGTTGCCAATAACCATTTTACTGGCTGGATTCCTGAATCATTGAAGAA
EST: gi|110712955|gb|EE088453.1|EE088453
EST:     CAATTTACTGGTAGTATTAATGTCCTTGCCAGTCTTCCTCTTGAAACATT                         GAATGTTGCCAATAACCATTTT
genomic: CAATTTACTGGTAGTATTAATGTCCTTGCCAGTCTTCCTCTTGAAACATTgtaagtggtg ... tgtttcttagGAATGTTGCCAATAACCATTTT