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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATGAGGTTTTCATTGCCATGTCCAAGGCACTGAACTTCATAAATCCGGATGAACTTTCGATGCAGTGTATATTGATTGCTTTGAACCGATTTCTTCAGgtttgatcatctctattttcatagtgttctaatgaaagcttcatctctatttcatggatataaaactggtatcatgaccattgaaattgattttggagaagtttttgctacaaaatatctgattttactgtgtaagcgatatgcatcaacag

Basic information

species Vitis vinifera
transcript Vv09s0002g00100.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g00100.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os03g08570.1 (Oryza sativa), 5'ss of exon 8
AGATGAGGTTTTCATTGCCATGTCCAAGGCACTGAACTTCATAAATCCGGATGAACTTTCGATGCAGTGTATATTGATTGCTTTGAACCGATTTCTTCAGgt-ttgatcat----ctctattttcata-gtgttcta-atgaaagcttcatctctatttcatggatataaaactg--gtatcatgaccattgaaattgattttggagaagtt-tttgctac----aaaatatctgatt---ttactgtgtaagcgatatgcatcaacag----------------
 ||||||||||||||||| ||||| |||||||| || ||||||||||| |||||  | || |||||||| ||  |||||||||| ||||||||||||||||| || || ||    ||||||  ||||  |||||  | ||||    ||| ||| |  ||   |||     | ||   |||| |   || |   | |   | |||     ||| ||| ||||    |  | |    | |   ||   |  ||   |   |  |  || |                 
CGATGAGGTTTTCATTGCAATGTCAAAGGCACTTAATTTCATAAATCCTGATGAGTTATCCATGCAGTGCATTCTGATTGCTTTAAACCGATTTCTTCAGgtatttattatgttgctctatggtcatgtgtgttgcatatgagtaattcttctgttctttccggagtagtaccttacgtattacatccttcttagtgtttcttgtctctgttgtttcctaccttgaggaaactcaaatgaattttcgcttagaggccttttaaaaaaaattatgcaaatgtgtag

upper sequence: Vv09s0002g00100.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G410515_T01 (Zea mays), 5'ss of exon 8
AGATGAGGTTTTCATTGCCATGTCCAAGGCACTGAACTTCATAAATCCGGATGAACTTTCGATGCAGTGTATATTGATTGCTTTGAACCGATTTCTTCAGgtttgatcatc---tctattttcatagtgttctaat-gaaagcttcatctc------tatttcatggatataaaact--ggtatcatgaccattgaaattgattttggagaagtttttgctacaaaatatctg--attttactgtgtaagcgatatgcatcaacag-----------------------
 ||||||||||| ||||| |||||||||||||| || ||||||||||| ||||| || || |||||||| || ||||||||||||||||||||||||||||| |     |    | || ||    | | |  || | |   | ||  | |       ||  | |   ||||  |  |    | || || | ||     ||| ||||     ||    |||||  |  ||  ||  |  |||   ||        ||   |  | |                        
CGATGAGGTTTTTATTGCAATGTCCAAGGCACTCAATTTCATAAATCCTGATGAGCTATCTATGCAGTGCATTTTGATTGCTTTGAACCGATTTCTTCAGgtatagctgttctatttaattgtgcaatatattagttgcctgttttgtttgaagaaatagcttacaaatattgatttttattttcttgtctatattctttgtttttacttgagaaaatgctaatatgtacttgcaacgttaagatgccttgtggatcttttgaaaagattactttatgtaaatgtgcag

upper sequence: Vv09s0002g00100.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA18G00720.1 (Glycine max), 5'ss of exon 7
AGATGAGGTTTTCATTGCCATGTCCAAGGCACTGAACTTCATAAATCCGGATGAACTTTCGATGCAGTGTATATTGATTGCTTTGAACCGATTTCTTCAGgtttgatcatctctattttcatagtgttctaatgaaagcttcatctctatttcatggatataaaactggtatcatgaccattgaaattgattttggagaagtttttgctacaaaatatctgattttactgtgtaagcgatatgcatcaacag
 |||||||| ||||| || ||||| |||||||| |||||||| ||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||| ||  |||    |    | |      ||| |      ||||   ||  |   |   |  | | ||  |||||  ||| |   ||| |     |     |                                           
TGATGAGGTGTTCATAGCAATGTCTAAGGCACTAAACTTCATCAATCCTGATGAACTTTCAATGCAATGTATATTGATTGCTTTAAACCGATTTCTTCAGgtgtgatcatttccttttcttaaacactatttcactagcat------tattgtgtgattgacagggtcattttatttccattagaatag---ttgaatggaatcagatt-------------------------------------------

upper sequence: Vv09s0002g00100.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA11G36810.1 (Glycine max), 5'ss of exon 7
AGATGAGGTTTTCATTGCCATGTCCAAGGCACTGAACTTCATAAATCCGGATGAACTTTCGATGCAGTGTATATTGATTGCTTTGAACCGATTTCTTCAGgtttgatcatctctattttc----atagtgttctaatgaaagcttcatctctatttcatggatataaaactggtatcatgaccattgaaattgattttggagaagtttttgctacaaaatatctgattttactgtgtaagcgatatgcatcaacag
 |||||||| ||||| || ||||| |||||||| |||||||| ||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||  || ||| ||  |||      | | | ||||| |  ||   |  | |   |  || ||  ||   | |   || || |   |||||  ||   |  ||                                                       
CGATGAGGTGTTCATAGCAATGTCGAAGGCACTAAACTTCATCAATCCTGATGAACTTTCAATGCAATGTATATTGATTGCTTTAAACCGATTTCTTCAGgtgcgaacatttccttttcttaaaacactattctactagaattattgtatgattgacaaggtcattttattcccattataatagttgaa--tggaatcagat------------------------------------------------------

upper sequence: Vv09s0002g00100.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT4G14210.2 (Arabidopsis thaliana), 5'ss of exon 8
AGATGAGGTTTTCATTGCCATGTCCAAGGCACTGAACTTCATAAATCCGGATGAACTTTCGATGCAGTGTATATTGATTGCTTTGAACCGATTTCTTCAGgtttgatcatctctattttcatagtgttctaatgaaagcttcatctctatttc-atggatataaaactggtatcatgaccattgaaattgattttggagaagtttttgctacaaaatatctgattttactgtgtaagcgatatgcatcaacag
 || ||||| || ||||||||||| ||||| || ||||| ||||| || |||||||| || ||||| || || ||||| ||||||||||| |||||||||||||||   |||     || ||     | |  |      ||   || | |||   || || |  | ||       || | ||   | ||    ||      ||                                                  
CGACGAGGTGTTTATTGCCATGTCAAAGGCGCTAAACTTTATAAACCCTGATGAACTGTCAATGCAATGCATTTTGATAGCTTTGAACCGGTTTCTTCAGgtttgacactctagccctttatttctctttgttcttccttttgcctgtctttttgtgaatctttatctcac----tggcaatcatagttaccattcacatggtc-------------------------------------------------