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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAAATGTGAGTGAACTAGGTTTGGTCACACCAGCAGGGAAAGTTGTATGGGgtaagaaattttttactatttgtactattttcattgttttgtgtttgcttcatctgcagcttttttattttttattttttgaattctgtggtggatgtag

Basic information

species Vitis vinifera
transcript Vv08s0105g00280.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0105g00280.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA10G10000.1 (Glycine max), 5'ss of exon 8
GTAAATGTGAGTGAACTAGGTTTGGTCACACCAGCAGGGAAAGTTGTATGGGgtaagaaattttttactatttgtactattt-tcattgttttgtgtttgcttcatctgcagcttttttattttttattttttgaattctgtggtggatgtag
|| ||||| |||||||| ||| | |||||||| || ||||||||||| ||||||||||   ||| | | || |||  || ||  |||||  |    ||| ||  |  ||  |  ||   ||||| | |    ||||| | |            
GTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGGGgtaagattatttgttccatgtgttttacttaccattgactgaaattttctgaaattgatgtgttggaattttgtttgccgtgaatgcag------------

upper sequence: Vv08s0105g00280.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA10G00490.1 (Glycine max), 5'ss of exon 8
GTAAATGTGAGTGAACTAGGTTTGGTCACACCAGCAGGGAAAGTTGTATGGGgtaagaaattttttactatttgtactattttcattgttttgtgtttgcttcatctgcagcttttttattttttattttttgaattctgtggtggatgtag
|| ||||| |||||||| ||| | |||||||| || ||||||||||| ||||||||||  || |||  |  ||||  | |  | |   ||   ||     || | ||| |   ||  | | ||  | ||||     | ||  ||||||| ||
GTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGGGgtaaga--ttattttttccttgtgttttgcttaccattgactgaa-attttaactgaaa--ttgatgtgttggaattttg----tttgccgtggatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351034903|gb|FQ458260.1|FQ458260
EST:     AATGTGAGTGAACTAGGTTTGGTCACACCCGGCAGGGAAAGTTGTATGGG                         GGAAATACGCACAAGTGA
genomic: AATGTGAGTGAACTAGGTTTGGTCACACCAG-CAGGGAAAGTTGTATGGGgtaagaaatt ... gtggatgtagGGAAATACGCACAAGTGA
EST: gi|110388463|gb|EC953218.1|EC953218
EST:     AAATGTGAGTGAACTAGGTTTGGTCACACCAGCTGGGAAAGTTGTATGGG                         GGAAATACGCACAAGTGACAAATAACCCATAGAATGATGGATGTATAAATG
genomic: AAATGTGAGTGAACTAGGTTTGGTCACACCAGCAGGGAAAGTTGTATGGGgtaagaaatt ... gtggatgtagGGAAATACGCACAAGTGACAAATAACCCAGAGAATGATGGATGTATAAATG
EST: gi|351034907|gb|FQ458264.1|FQ458264
EST:     AAATGTGAGTGAACTAGGTTTGGTCACACCGGCCGGGAAAGTTGTATGGG                         GGAAATACCCACAAGTGACAAATAACCC
genomic: AAATGTGAGTGAACTAGGTTTGGTCACACCAGCAGGGAAAGTTGTATGGGgtaagaaatt ... gtggatgtagGGAAATACGCACAAGTGACAAATAACCC
EST: gi|71886734|gb|DT035789.1|DT035789
EST:     AAATGTGAGTGAACTAGGTTTGGTCACACCAGCTGGGAAAGTTGTATGGG                         GGAAATACGCACAAGTGACAAATAACCCAGAGAATGATGGATGTATAAATG
genomic: AAATGTGAGTGAACTAGGTTTGGTCACACCAGCAGGGAAAGTTGTATGGGgtaagaaatt ... gtggatgtagGGAAATACGCACAAGTGACAAATAACCCAGAGAATGATGGATGTATAAATG
EST: gi|351012282|gb|FQ429967.1|FQ429967
EST:     AAATGTGAGTGAACTAGGTTTGGTCACACCAGCAGGGAAAGTTGTATGGG                         GGAAATACGCACAAGTGACAAATAACCCAGAGAATGATGGATGTATAAATG
genomic: AAATGTGAGTGAACTAGGTTTGGTCACACCAGCAGGGAAAGTTGTATGGGgtaagaaatt ... gtggatgtagGGAAATACGCACAAGTGACAAATAACCCAGAGAATGATGGATGTATAAATG
EST: gi|351053282|gb|FQ459150.1|FQ459150
EST:     AAATGTGAGTGAACTAGGTTTGGCCACACCAGCAGGGAAAGTTGTATGGG                         GGAAATACGCACAAGTGACAAATAACCCAGAGAATGATGGATGTATAAAAT
genomic: AAATGTGAGTGAACTAGGTTTGGTCACACCAGCAGGGAAAGTTGTATGGGgtaagaaatt ... gtggatgtagGGAAATACGCACAAGTGACAAATAACCCAGAGAATGATGGATGTATAAA-T
EST: gi|110691373|gb|EE069403.1|EE069403
EST:     AAATGTGAGTGAACTAGGTTTGGTCACACCAGCTGGGAAAGTTGTATGGG                         GGAAATACGCACAAGTGACAAATTACCCAGAGAAT
genomic: AAATGTGAGTGAACTAGGTTTGGTCACACCAGCAGGGAAAGTTGTATGGGgtaagaaatt ... gtggatgtagGGAAATACGCACAAGTGACAAATAACCCAGAGAAT
EST: gi|351025564|gb|FQ426380.1|FQ426380
EST:     AAATGTGAGTGAACTAGGTTTGGTCACACCAGCAGGGAAAGTTGTATGGG                         GGAAATACGCACAAGTGACAAATAACCCAGAGAATGATGGATGTATAAATG
genomic: AAATGTGAGTGAACTAGGTTTGGTCACACCAGCAGGGAAAGTTGTATGGGgtaagaaatt ... gtggatgtagGGAAATACGCACAAGTGACAAATAACCCAGAGAATGATGGATGTATAAATG
EST: gi|110686904|gb|EE063847.1|EE063847
EST:     AA-TGTGAGTGAACTANGTTTGGTCACACCAGCTGGGAAAGTTGTATGGG                         GGAAATACGNCACA-GTGACAAATAACCCAGAGAAT
genomic: AAATGTGAGTGAACTAGGTTTGGTCACACCAGCAGGGAAAGTTGTATGGGgtaagaaatt ... gtggatgtagGGAAATACG-CACAAGTGACAAATAACCCAGAGAAT
EST: gi|351035636|gb|FQ463481.1|FQ463481
EST:     AAATGTGAGTGAACTAGGTTTGGTCACACCAGCAGGGAAAGTTGTATGGG                         GGAAATACGCACAAGTGACAAATAACCCAGAGAATGATGGATGTATAAATG
genomic: AAATGTGAGTGAACTAGGTTTGGTCACACCAGCAGGGAAAGTTGTATGGGgtaagaaatt ... gtggatgtagGGAAATACGCACAAGTGACAAATAACCCAGAGAATGATGGATGTATAAATG
EST: gi|349827505|gb|FQ422373.1|FQ422373
EST:     AAATGTGAGTGAACTAGGTTTGGTCACACCAGCAGGGAAAGTTGTATGGG                         GGAAATACGCACAAGTGACAAATAACC
genomic: AAATGTGAGTGAACTAGGTTTGGTCACACCAGCAGGGAAAGTTGTATGGGgtaagaaatt ... gtggatgtagGGAAATACGCACAAGTGACAAATAACC
EST: gi|351056948|gb|FQ443575.1|FQ443575
EST:     AAATGTGAGTGAACTAGGTTTGGTCACACCCGCAGGGAAAGTTGTATGGT                         GGAAATACGCACAAGTGACAAATAACCCAGAGAATGATGGATGTATAAATG
genomic: AAATGTGAGTGAACTAGGTTTGGTCACACCAGCAGGGAAAGTTGTATGGGgtaagaaatt ... gtggatgtagGGAAATACGCACAAGTGACAAATAACCCAGAGAATGATGGATGTATAAATG
EST: gi|351049548|gb|FQ429170.1|FQ429170
EST:     AAATGTGAGTGAACTAGGTTTGGTCACACCAGCTGGGAAAGTTGTATGGG                         GGAAATACGCAC
genomic: AAATGTGAGTGAACTAGGTTTGGTCACACCAGCAGGGAAAGTTGTATGGGgtaagaaatt ... gtggatgtagGGAAATACGCAC
EST: gi|349830525|gb|FQ416835.1|FQ416835
EST:     AAATGTGAGTGAACTAGGTTTGGTCACACCAGCAGGGAAAGTTGTATGGG                         GGAAATACGCACAAGTGACAAATAACCCAGAGAATGATGGATGTATAAATG
genomic: AAATGTGAGTGAACTAGGTTTGGTCACACCAGCAGGGAAAGTTGTATGGGgtaagaaatt ... gtggatgtagGGAAATACGCACAAGTGACAAATAACCCAGAGAATGATGGATGTATAAATG
EST: gi|351049014|gb|FQ431558.1|FQ431558
EST:     AAATGTGAGTGAACTAGGTTTGGTCACACCAGCTGGGAAAGTTGTATGGG                         GGAAATACGCACAAGTGACAAATAACCCAGAGAATGATGGATGTATAAATG
genomic: AAATGTGAGTGAACTAGGTTTGGTCACACCAGCAGGGAAAGTTGTATGGGgtaagaaatt ... gtggatgtagGGAAATACGCACAAGTGACAAATAACCCAGAGAATGATGGATGTATAAATG
EST: gi|351056833|gb|FQ443460.1|FQ443460
EST:     AAATGTGAGTGAACTAGGTTTGGTCACACCAGCAGGGAAAGTTGTATGGG                         GGAAATACGCACAAGTGACAAATAACCCAGAGAATGATGGATGTATAAATG
genomic: AAATGTGAGTGAACTAGGTTTGGTCACACCAGCAGGGAAAGTTGTATGGGgtaagaaatt ... gtggatgtagGGAAATACGCACAAGTGACAAATAACCCAGAGAATGATGGATGTATAAATG
EST: gi|110701282|gb|EE078674.1|EE078674
EST:     AAATGTGAGTGAACTAGGTTTGGTCACACCAGCTGGGAAAGTTGTATGGG                         GGAAATACGCACAAGTGACAAATAACCCAGAGAATGATGGATGTATAAATG
genomic: AAATGTGAGTGAACTAGGTTTGGTCACACCAGCAGGGAAAGTTGTATGGGgtaagaaatt ... gtggatgtagGGAAATACGCACAAGTGACAAATAACCCAGAGAATGATGGATGTATAAATG