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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTTCGAAATTTCTTACTTGCTGAGAGAATTATGCGATCTGCAAACTGTTCCCCTATTTCACACCCCATGTTGCCCCCAACTCATCAGCATCATATGTGgtacctactggaaatactagataagtaattttgttaagtgttcaataatccatttgtctcataatgtgccatgcatgtgtgctatag

Basic information

species Vitis vinifera
transcript Vv08s0058g00890.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os12g01922.1 (Oryza sativa), 5'ss of exon 8
TGTTTCGAAATTTCTTACTTGCTGAGAGAATTATGCGATCTGCAAACTGTTCCCCTATTTCACACCCCATGTTGCCCCCAACTCATCAGCATCATATGTGgtacctactggaaatactagataagtaattttgttaagtgttcaataatccatttgtctcataatgtgccatgcatgtgtgctatag
| ||||| || |||||||||||||||||||| ||||| || ||||| |||||||| |||||| ||||  ||||||| |||||||||||||| |||||||||||  |  ||| | ||    ||   |  | | ||| ||    |  |  | |||||   |  |||| | | |    |   |  ||   
TCTTTCGCAACTTCTTACTTGCTGAGAGAATCATGCGGTCCGCAAATTGTTCCCCAATTTCATACCCTTTGTTGCCACCAACTCATCAGCACCATATGTGgtaattgatggcactagcc-attctttttatagtttagctacctcttctgcattttctt--taatttcctaaattttaattttag--

upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os11g01872.1 (Oryza sativa), 5'ss of exon 7
TGTTTCGAAATTTCTTACTTGCTGAGAGAATTATGCGATCTGCAAACTGTTCCCCTATTTCACACCCCATGTTGCCCCCAACTCATCAGCATCATATGTGgtacctactggaaatactagataagtaattttgttaagtgttcaataatccatttgtctcataatgtgccatgcatgtgtgctatag
| ||||| || |||||||||||||||||||| ||||| || ||||| |||||||| |||||| ||||  |||| || |||||||||||||| |||||||||||  |  ||| | ||    ||   |  | | ||| ||    |  |  |||||||   |  |||| | | |    |   |  ||   
TCTTTCGCAACTTCTTACTTGCTGAGAGAATCATGCGGTCCGCAAATTGTTCCCCAATTTCATACCCTTTGTTACCACCAACTCATCAGCACCATATGTGgtaattgatggcactagcc-attctttttatagtttagctacctcttctccattttctt--taatttcctaaatttcaattttag--

upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G048067_T02 (Zea mays), 5'ss of exon 8
TGTTTCGAAATTTCTTACTTGCTGAGAGAATTATGCGATCTGCAAACTGTTCCCCTATTTCACACCCCATGTTGCCCCCAACTCATCAGCATCATATGTGgtacctactggaaatactagataagtaattttgttaagtgttcaataatccatttgtctcataatgtgccatgcatgtgtgctatag
| ||||| || ||||| |||||||||||||| |||||||| ||||| ||||| ||  ||||  | ||  |||| || ||||| ||||| || ||||||||||| |||         ||   |   |  |||| ||   |   | |   |   | ||  |  |||  ||| |    |  |        
TCTTTCGTAACTTCTTGCTTGCTGAGAGAATCATGCGATCAGCAAATTGTTCTCCAGTTTCTTATCCGTTGTTACCTCCAACACATCAACACCATATGTGgtaactaac-------ctgacttgttcttttttttgcattaactaccttttgtgtgatttgtaacatgctaaatctcag--------

upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA18G44210.1 (Glycine max), 5'ss of exon 8
TGTTTCGAAATTTCTTACTTGCTGAGAGAATTATGCGATCTGCAAACTGTTCCCCTATTTCACACCCCATGTTGCCCCCAACTCATCAGCATCATATGTGgtacctactggaaatactagata-agtaattttgtt--aagtgttcaataatccatttgtctcataatgtgccatgcatgtgtgctatag
|||||||||||||  ||||||||||| |||| |||||||||||||| ||||| ||| | || ||||| ||||| || || || ||||||||||||||||||||  |  |||  ||  | | ||   ||||||| ||  ||  ||      | |  ||     ||   | ||   |  ||  |  ||  ||
TGTTTCGAAATTTTCTACTTGCTGAGCGAATCATGCGATCTGCAAATTGTTCTCCTGTCTCTCACCCAATGTTACCTCCGACCCATCAGCATCATATGTGgtat-tgttggtgattattgttatgataatttttttctaaacgtgttgccaacttttgtcaacagtttatgtttt-tatccgcactgcag

upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA09G41510.1 (Glycine max), 5'ss of exon 8
TGTTTCGAAATTTCTTACTTGCTGAGAGAATTATGCGATCTGCAAACTGTTCCCCTATTTCACACCCCATGTTGCCCCCAACTCATCAGCATCATATGTGgtacctactggaaatactagataagtaattttgttaagtgttcaataatccatttgtctcataatgtgc-catgcatgtgtgctatag
|||||||||||||  ||||||||||| |||| |||||||||||||| ||||| ||| | || ||||| ||||| || || || ||||||||||||||||||||  |  |||  ||  |   || |  ||||| ||          |     ||||     | | | |     |  || ||  ||  ||
TGTTTCGAAATTTTCTACTTGCTGAGCGAATCATGCGATCTGCAAATTGTTCTCCTGTCTCTCACCCAATGTTACCTCCGACCCATCAGCATCATATGTGgtat-tgttggtgattatttttatgatatttttttctaaacgtgttgtcaaattttgtcaacagtttatgtttttatctgcactgcag

upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT3G08850.1 (Arabidopsis thaliana), 5'ss of exon 8
TGTTTCGAAATTTCTTACTTGCTGAGAGAATTATGCGATCTGCAAACTGTTCCCCTATTTCACACCCCATGTTGCCCCCAACTCATCAGCATCATATGTGgtacctactggaaatactagataagtaattttgttaagtgttcaataatcca--tttgtctcataatgtgccatgcatgtgtgctatag
| || || ||||||||||||||||||||||| ||||| || |||||||||   || || || ||||| ||| |||| || || ||||| ||||||||||||||   |     ||   ||      |  || ||| || ||||   |        |||| ||||   | | |  ||||||  |   |   
TTTTCCGGAATTTCTTACTTGCTGAGAGAATAATGCGGTCCGCAAACTGTAATCCAATATCTCACCCTATGCTGCCTCCTACGCATCAACATCATATGTGgtattcaacaagaaccatattcttctg-ttatgtaaaatgttatgtgtctagattttgactca-gctatccgttgcatgcttttcag--

upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT5G01770.1 (Arabidopsis thaliana), 5'ss of exon 8
TGTTTCGAAATTTCTTACTTGCTGAGAGAATTATGCGATCTGCAAACTGTTCCCCTATTTCACACCCCATGTTGCCCCCAACTCATCAGCATCATATGTGgtacctactggaaatactagataagtaattttgttaagtgttcaa-taatccatttgtctcataatgtgccatgcatgtgtgctatag
| || |||||||||||||| |||||||| || ||||| || | ||| ||| |||| || ||||| || ||| | || || || ||||||||||||||||||||      |  |   |||| |  | | |||  | || |||     | | |  |||  |||       || |   |  |||  |  ||
TTTTCCGAAATTTCTTACTAGCTGAGAGGATAATGCGGTCCGGAAATTGTACCCCAATATCACATCCTATGCTACCTCCTACGCATCAGCATCATATGTGgtattggacgttatccctagttt-gcattttgatgaattgtgtgtctgagctctttacctc------cgcta-atagctgttttccag