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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGGAAGCTGAAACTTCCAGTCCTGCCAACCACCACCATTGGGTCTTTCCCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAAgtgagtcttatttgataattcttcttattttgctctcttagaaattgattgtcacatttctttattctatgccctcattacacccttctctttttag

Basic information

species Vitis vinifera
transcript Vv08s0056g01570.t01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110400294|gb|EC966852.1|EC966852
EST:     CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAA                         GATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
genomic: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAAgtgagtctta ... ctctttttagGATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
EST: gi|71886245|gb|DT035300.1|DT035300
EST:     CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAA                         GATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
genomic: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAAgtgagtctta ... ctctttttagGATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
EST: gi|161708072|gb|FC055712.1|FC055712
EST:     CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAA                         GATCTCTGAGGAGGGTTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
genomic: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAAgtgagtctta ... ctctttttagGATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
EST: gi|110374362|gb|EC939061.1|EC939061
EST:     GCCGTGAATACAAGGCTAAAAA                         GATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
genomic: GCCGTGAATACAAGGCTAAAAAgtgagtctta ... ctctttttagGATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
EST: gi|110404481|gb|EC969603.1|EC969603
EST:     CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAA                         GATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
genomic: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAAgtgagtctta ... ctctttttagGATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
EST: gi|110429998|gb|EC996518.1|EC996518
EST:     CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAA                         GATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
genomic: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAAgtgagtctta ... ctctttttagGATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
EST: gi|110426553|gb|EC992966.1|EC992966
EST:     GTGAATACAAGGCTAAAAA                         GATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
genomic: GTGAATACAAGGCTAAAAAgtgagtctta ... ctctttttagGATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
EST: gi|110376456|gb|EC941522.1|EC941522
EST:     CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAA                         GATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
genomic: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAAgtgagtctta ... ctctttttagGATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
EST: gi|161721696|gb|FC070122.1|FC070122
EST:     CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAA                         GATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
genomic: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAAgtgagtctta ... ctctttttagGATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
EST: gi|110383670|gb|EC948053.1|EC948053
EST:     CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAA                         GATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
genomic: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAAgtgagtctta ... ctctttttagGATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
EST: gi|110698652|gb|EE076398.1|EE076398
EST:     CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAA                         GATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
genomic: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAAgtgagtctta ... ctctttttagGATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
EST: gi|110402853|gb|EC963625.1|EC963625
EST:     CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAA                         GATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
genomic: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAAgtgagtctta ... ctctttttagGATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
EST: gi|110690135|gb|EE066968.1|EE066968
EST:     CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAA                         GATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
genomic: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAAgtgagtctta ... ctctttttagGATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
EST: gi|33408742|gb|CF214369.1|CF214369
EST:     CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAA                         GATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
genomic: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAAgtgagtctta ... ctctttttagGATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
EST: gi|161721618|gb|FC070828.1|FC070828
EST:     CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAA                         GATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
genomic: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAAgtgagtctta ... ctctttttagGATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
EST: gi|110719746|gb|EE095143.1|EE095143
EST:     CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAA                         GATCTCTGAAGANGG-TTATGTTAAGGCCATCAAAGAAGAAATCAACAAGG
genomic: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAAgtgagtctta ... ctctttttagGATCTCTGAGGA-GGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGG
EST: gi|33409401|gb|CF215028.1|CF215028
EST:     CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAA                         GATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
genomic: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAAgtgagtctta ... ctctttttagGATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAGGAAGCTGAAACTTCCAGTCCTGCCAACCACCACCATTGGGTCTTTCCCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAAgtgagtcttatttgataattcttcttattttgctctcttagaaattgattgtcacatttctttattctatgccctcattacacccttctctttttag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA