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GCAGCAAGGGGGAATCATTGTTGCAGGTCCTGGTAAAAGTAACATCTCATACATCCACAAGgttcgtcccttctacttctatccagttctctctctttttgcttctagaaataaccatgtgaatccatcaataagcctatcagaggaaaaagaataacaat...
species | Vitis vinifera |
transcript | Vv08s0040g03130.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GAATCATTGTTGCAGGTCCCGGTAAAAGTAACATCTCATACATCCACAAG GACAAAGAAGCAGGAGATGATCCAGATATGGAAGATATTTTGAATGCATGTEST: gi|110374235|gb|EC938881.1|EC938881
genomic: GAATCATTGTTGCAGGTCCTGGTAAAAGTAACATCTCATACATCCACAAGgttcgtccct ... agttgattagGACAAAGAAGCAGGAGACGATCCAGATATGGAAGATATTTTGACTGCATGT
EST: GAATCATTGTTGCAGGTCCTGGTAAAAGTAACATCTCATACATCCA-A-G GACAAAGAAGCAGGAGATGATCCAGATATGGAAGATATTTTGAATGCATGTEST: gi|110731056|gb|EE108844.1|EE108844
genomic: GAATCATTGTTGCAGGTCCTGGTAAAAGTAACATCTCATACATCCACAAGgttcgtccct ... agttgattagGACAAAGAAGCAGGAGACGATCCAGATATGGAAGATATTTTGACTGCATGT
EST: GAATCATTGTTGCAAGTCCTGGTAAAAGTAACATCTCATACATCCACAAG GACAA-GAAGCAGGAGATGATCCAGATAAGGAAGATATTTTGAEST: gi|110360893|gb|EC924336.1|EC924336
genomic: GAATCATTGTTGCAGGTCCTGGTAAAAGTAACATCTCATACATCCACAAGgttcgtccct ... agttgattagGACAAAGAAGCAGGAGACGATCCAGATATGGAAGATATTTTGA
EST: GAATCATTGTTGCAGGTCCTGGTAAAAGTAACATCTCATACATCCACAAG GACAAAGAAGCAGGAGATGATCCAGATATGGAAGATATTTTGAATGCATGT
genomic: GAATCATTGTTGCAGGTCCTGGTAAAAGTAACATCTCATACATCCACAAGgttcgtccct ... agttgattagGACAAAGAAGCAGGAGACGATCCAGATATGGAAGATATTTTGACTGCATGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGCAAGGGGGAATCATTGTTGCAGGTCCTGGTAAAAGTAACATCTCATACATCCACAAGgttcgtcccttctacttctatccagttctctctctttttgcttctagaaataaccatgtgaatccatcaataagcctatcagaggaaaaagaataacaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcccttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagaa