Sequence
atgc intronic sequence ATGC exonic sequenceCAATCCATTCTATGCTGGTTTTGGAAATAGAGACACAGATGAGCTCAGTTATAGGAAGATTGGGATCCCAAAGGGCAAAATATTTATCATCAACCCTAAGgtacttcaccaatatttttcatggcctaccatcctgggattacaagggcattttacttgaaattttcatttgaacttgacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g02800.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os05g38710.1 (Oryza sativa), 5'ss of exon 9
CAATCCATTCTATGCTGGTTTTGGAAATAGAGACACAGATGAGCTCAGTTATAGGAAGATTGGGATCCCAAAGGGCAAAATATTTATCATCAACCCTAAGgtact-tcaccaatatttttcatggcctaccatcctgggattacaagggcattttacttgaaattttcatttgaacttgacag
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CAATCCATTTTATGCTGGATTTGGCAACAGAGATACAGATGAGCTTAGTTACAAAAAGATGGGAATTCCAAAAGGGAAAATCTTTATCATCAACCCAAAGgtatggccattacactagttaaaagttagtgatgccatgcttgtattg-tgccttttttaaagtcatcctgtgcgtgcag---
upper sequence: Vv08s0040g02800.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G099481_T01 (Zea mays), 5'ss of exon 9
CAATCCATTCTATGCTGGTTTTGGAAATAGAGACACAGATGAGCTCAGTTATAGGAAGATTGGGATCCCAAAGGGCAAAATATTTATCATCAACCCTAAGgtacttcaccaatatt-tttcatggcctaccatcctgggattacaagggcatttta--cttgaaattttcatttga--acttgacag
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CAATCCATTTTATGCTGGGTTTGGTAACAGAGATACTGATGAGCTCAGTTACAAGAAGATGGGAATACCTAAAGGCAAGATTTTTATCATCAACCCAAAGgtatctctatcacacaacgtcgtaaacattagtattgtgtttaactatgtatataagcctcttaaatcacgtcccatggggtcgcag
upper sequence: Vv08s0040g02800.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA10G05320.1 (Glycine max), 5'ss of exon 9
CAATCCATTCTATGCTGGTTTTGGAAATAGAGACACAGATGAGCTCAGTTATAGGAAGATTGGGATCCCAAAGGGCAAAATATTTATCATCAACCCTAAGgt------acttcaccaatatttttcatggcctaccatcctgggattacaagggcattttacttga-------aattttcatttgaacttgacag
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TAATCCATTCTATGCTGGATTTGGCAATAGAGATACAGATGAACTTAGTTACAGAAAGATTGGAATCCCGAAGGGCAAAATATTTATTATCAACCCTAAGgtttgcatcctggactcatatttctgacgat-tagtatattttatttatttatttcttctttgtgaccaactaaatgcctatgcaaact-aacag
upper sequence: Vv08s0040g02800.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA13G19730.1 (Glycine max), 5'ss of exon 9
CAATCCATTCTATGCTGGTTTTGGAAATAGAGACACAGATGAGCTCAGTTATAGGAAGATTGGGATCCCAAAGGGCAAAATATTTATCATCAACCCTAAGgtactt------caccaatatttttcatggcctaccatcctgggattacaagggcattttacttga--aattttcatttgaacttgacag
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TAATCCATTCTACGCTGGATTTGGCAATAGAGATACAGATGAACTTAGTTACAGAAAGATTGGAGTCCCGAAGGGCAAAATATTTATTATCAACCCTAAGgtgttcatcctggacacatatttctgacaattagtatttatttatttattttttctttgtgaccaactaaatgcctaggaaaactaacag
upper sequence: Vv08s0040g02800.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA19G35930.1 (Glycine max), 5'ss of exon 11
CAATCCATTCTATGCTGGTTTTGGAAATAGAGACACAGATGAGCTCAGTTATAGGAAGATTGGGATCCCAAAGGGCAAAATATTTATCATCAACCCTAAGgtac---ttcaccaatatttttcatggcctaccatcctgggattacaagggcattttacttgaaattttcatttgaacttgacag
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TAATCCGTTCTATGCGGGGTTTGGCAATAGAGACACGGATGAACTCAGTTACAGGAAGATAGGAATCCCGAAGGGCAAGATATTTATTATTAATCCTAAGgtgtggatttttttatttttttacaatagtatttttgttagttctcacagggtactaac---agaatgccctgtaaact-aacag
upper sequence: Vv08s0040g02800.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT3G09560.1 (Arabidopsis thaliana), 5'ss of exon 9
CAATCCATTCTATGCTGGTTTTGGAAATAGAGACACAGATGAGCTCAGTTATAGGAAGATTGGGATCCCAAAGGGCAAAATATTTATCATCAACCCTAAGgtactt------caccaatatttttcatggcctaccatcctgggattacaagggcattt--tacttgaaattttcatttgaacttgacag-
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CAACCCGTTCTATGCCGGATTTGGAAATAGAGACACAGATGAGCTGAGTTACAGAAAACTCGGAATCCCAAAGGGAAAGATATTCATAATCAACCCAAAGgtactcacaatcttctagaatctgacatgcatggttgttttgtttcttcacgtgtattgagtgatgagagtctctgttaaaaaatggctagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110427773|gb|EC994224.1|EC994224EST: ATAGGAAGATTGGGATCCCAAAGGGCAAAATATTTATCATCAACCCTAAG GGTGAAGTGGCCATTAGTCATCGGATTGATGTGAAATCCTACACCTCTTTA
genomic: ATAGGAAGATTGGGATCCCAAAGGGCAAAATATTTATCATCAACCCTAAGgtacttcacc ... aacttgacagGGTGAAGTGGCCATTAGTCATCGGATTGATGTGAAATCCTACACCTCTTTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAATCCATTCTATGCTGGTTTTGGAAATAGAGACACAGATGAGCTCAGTTATAGGAAGATTGGGATCCCAAAGGGCAAAATATTTATCATCAACCCTAAGgtacttcaccaatatttttcatggcctaccatcctgggattacaagggcattttacttgaaattttcatttgaacttgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA